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Add PhaseEncodingDirection and EchoNumber to files and mri_violations_log insert statements #785

Merged
merged 13 commits into from
Aug 18, 2022
Merged

Add PhaseEncodingDirection and EchoNumber to files and mri_violations_log insert statements #785

merged 13 commits into from
Aug 18, 2022

Commits on Aug 11, 2022

  1. modify insertion into the mri_violations_log

    @cmadjar
    cmadjar committed Aug 11, 2022
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  2. modify is_file_unique function perl side

    @cmadjar
    cmadjar committed Aug 11, 2022
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  3. modify minc_insertion.pl script to add PhaseEncodingDirectin and Echo… 

    …Number to the file data object - perl side
    @cmadjar
    cmadjar committed Aug 11, 2022
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  4. check uniqueness of file based on seriesUID, EchoTime, EchoNumber and… 

    … PhaseEncodingDirection in python scripts
    @cmadjar
    cmadjar committed Aug 11, 2022
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  5. populate PhaseEncDir, EchoTime, EchoNumber in insertion to files tabl… 

    …e for bids_import
    @cmadjar
    cmadjar committed Aug 11, 2022
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  6. set PhaseEncDir and EchoNb to none if not present in JSON file

    @cmadjar
    cmadjar committed Aug 11, 2022
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  7. update file non unique message

    @cmadjar
    cmadjar committed Aug 11, 2022
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  8. insert PhaseEncDir and EchoNb in mri_violations_log and files tables … 

    …in python pipeline
    @cmadjar
    cmadjar committed Aug 11, 2022
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  9. fix missing parentheses

    @cmadjar
    cmadjar committed Aug 11, 2022
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  10. fix extra brackets in nifti_insertion.py

    @cmadjar
    cmadjar committed Aug 11, 2022
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  11. file matching type with regex instead of text as pybids returns eithe… 

    …r json or .json etc depending on it version
    @cmadjar
    cmadjar committed Aug 11, 2022
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  12. fix bug

    @cmadjar
    cmadjar committed Aug 11, 2022
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Commits on Aug 15, 2022

  1. fix phaseencodingdirection and echonumber set to null when inserting … 

    …into files table for perl pipeline
    @cmadjar
    cmadjar committed Aug 15, 2022
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