Merge branch 'acts-project:main' into alignment_group

.github/workflows/checks.yml

@@ -150,3 +150,13 @@ jobs:
       - name: Check
         run: >
           CI/check_fpe_masks.py --token ${{ secrets.GITHUB_TOKEN }}
+  unused_files:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+      - name: Check
+        run: >
+          CI/check_unused_files.py

.zenodo.json

@@ -42,7 +42,7 @@
       "name": "Xiaocong Ai"
     },
     {
-      "affiliation": "Universitaet Freiburg",
+      "affiliation": "Universitaet Regensburg",
       "name": "Benjamin Huth"
     },
     {
@@ -113,6 +113,11 @@
       "name": "Stephen Nicholas Swatman",
       "orcid": "0000-0002-3747-3229"
     }
+    {
+      "affiliation": "CERN / TU Wien",
+      "name": "Felix Russo",
+      "orcid": "0009-0005-8975-2245"
+    }
   ],
   "access_right": "open",
   "related_identifiers": [

AUTHORS

@@ -15,6 +15,7 @@ The following people have contributed to the project (in alphabetical order):
 - Fabian Klimpel, CERN
 - Robert Langenberg, UMass
 - Alexander J. Pfleger, CERN, University of Graz
+- Felix Russo, CERN, TU Wien
 - Andreas Salzburger, CERN
 - Bastian Schlag, CERN, JGU Mainz
 - Andreas Stefl, CERN, TU Wien

CI/check_unused_files.py

@@ -0,0 +1,228 @@
+#!/usr/bin/env python3
+
+from pathlib import Path
+import os
+import sys
+import subprocess
+
+
+def file_can_be_removed(searchstring, scope):
+    cmd = "grep -IR '" + searchstring + "' " + " ".join(scope)
+
+    p = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE)
+    output, _ = p.communicate()
+    return output == b""
+
+
+def count_files(path=".", exclude_dirs=(), exclude_files=()):
+    count = 0
+    for root, dirs, files in os.walk(path):
+        dirs[:] = [d for d in dirs if d not in exclude_dirs]
+        files[:] = [f for f in files if f not in exclude_files]
+        count += len(files)
+
+    return count
+
+
+def main():
+    print("\033[32mINFO\033[0m Start check_unused_files.py ...")
+    exclude_dirs = (
+        "Scripts",
+        "thirdparty",
+        "CI",
+        "git",
+        "cmake",
+        ".git",
+        ".github",
+        ".",
+        ".idea",
+    )
+    exclude_files = (
+        "acts_logo_colored.svg",
+        ".gitignore",
+        "README.md",
+        "CMakeLists.txt",
+        "DetUtils.h",
+        "CommandLineArguments.h",
+        # Filename not completed in source
+        "vertexing_event_mu20_beamspot.csv",
+        "vertexing_event_mu20_tracks.csv",
+        "vertexing_event_mu20_vertices_AMVF.csv",
+        # TODO Move the following files to a better place?
+        "Magfield.ipynb",
+        "SolenoidField.ipynb",
+        # TODO Add README next to the following files?
+        "default-input-config-generic.json",
+        "geoSelection-openDataDetector.json",
+        "alignment-geo-contextualDetector.json",
+    )
+
+    suffix_header = (
+        ".hpp",
+        ".cuh",
+    )
+    suffix_source = (
+        ".ipp",
+        ".cpp",
+        ".cu",
+    )
+    suffix_image = (
+        ".png",
+        ".svg",
+        ".jpg",
+        ".gif",
+    )
+    suffix_python = (".py",)
+    suffix_doc = (
+        ".md",
+        ".rst",
+    )
+    suffix_other = (
+        "",
+        ".csv",
+        ".css",
+        ".gdml",
+        ".hepmc3",
+        ".in",
+        ".ipynb",
+        ".json",
+        ".j2",
+        ".onnx",
+        ".root",
+        ".toml",
+        ".txt",
+        ".yml",
+    )
+    suffix_allowed = (
+        suffix_header
+        + suffix_source
+        + suffix_image
+        + suffix_python
+        + suffix_doc
+        + suffix_other
+    )
+
+    exit = 0
+
+    dirs_base = next(os.walk("."))[1]
+    dirs_base[:] = [d for d in dirs_base if d not in exclude_dirs]
+    dirs_base_docs = ("docs",)
+    dirs_base_code = [d for d in dirs_base if d not in dirs_base_docs]
+
+    # Collectors
+    wrong_extension = ()
+    unused_files = ()
+
+    # walk over all files
+    for root, dirs, files in os.walk("."):
+        dirs[:] = [d for d in dirs if d not in exclude_dirs]
+        files[:] = [f for f in files if f not in exclude_files]
+
+        # Skip base-directory
+        if str(Path(root)) == ".":
+            continue
+
+        # Print progress
+        if root[2:] in dirs_base:
+            processed_files = 0
+            current_base_dir = root
+            number_files = count_files(root, exclude_dirs, exclude_files)
+            # print empty to start a new line
+            print("")
+
+        # Skip "white-paper-figures"
+        # TODO Find a more elegant way
+        if str(root).find("white_papers/figures") != -1:
+            processed_files += count_files(root, exclude_dirs, exclude_files)
+            continue
+
+        # Skip "DD4hep-tests" since their cmake looks a bit different
+        # TODO Find a more elegant way
+        if str(root).find("Tests/UnitTests/Plugins/DD4hep") != -1:
+            processed_files += count_files(root, exclude_dirs, exclude_files)
+            continue
+
+        root = Path(root)
+        for filename in files:
+            processed_files += 1
+            # get the full path of the file
+            filepath = root / filename
+
+            # Check for wrong extensions
+            if filepath.suffix not in suffix_allowed:
+                wrong_extension += (str(filepath),)
+
+            # Check header files and remove
+            if filepath.suffix in suffix_header + suffix_source:
+                if file_can_be_removed(filepath.stem, dirs_base_code):
+                    unused_files += (str(filepath),)
+                    remove_cmd = "rm " + str(filepath)
+                    os.system(remove_cmd)
+
+            # TODO Find test to check python files
+            if filepath.suffix in suffix_python:
+                continue
+
+            # Check documentation files (weak tests)
+            # TODO find more reliable test for this
+            if filepath.suffix in suffix_doc:
+                if file_can_be_removed(filepath.stem, dirs_base_docs):
+                    unused_files += (str(filepath),)
+                    remove_cmd = "rm " + str(filepath)
+                    os.system(remove_cmd)
+
+            # Check and print other files
+            if filepath.suffix in suffix_image + suffix_other:
+                if file_can_be_removed(filename, dirs_base):
+                    unused_files += (str(filepath),)
+                    remove_cmd = "rm " + str(filepath)
+                    os.system(remove_cmd)
+
+        # Print the progress in place
+        progress = int(20 * processed_files / number_files)
+        sys.stdout.write("\r")
+        sys.stdout.write(
+            "Checked [%-20s] %d/%d files in %s"
+            % ("=" * progress, processed_files, number_files, current_base_dir)
+        )
+        sys.stdout.flush()
+
+    if len(wrong_extension) != 0:
+        print(
+            "\n\n\033[31mERROR\033[0m "
+            + f"The following {len(wrong_extension)} files have an unsupported extension:\n\n"
+            + "\033[31m"
+            + "\n".join(wrong_extension)
+            + "\033[0m"
+            + "\nCheck if you can change the format to one of the following:\n"
+            + "\n".join(suffix_allowed)
+            + "\nIf you really need that specific extension, add it to the list above.\n"
+        )
+
+        exit += 1
+
+    if len(unused_files) != 0:
+        print(
+            "\n\n\033[31mERROR\033[0m "
+            + f"The following {len(unused_files)} files seem to be unused:\n"
+            + "\033[31m"
+            + "\n".join(unused_files)
+            + "\033[0m"
+            + "\nYou have 3 options:"
+            + "\n\t- Remove them"
+            + "\n\t- Use them (check proper include)"
+            + "\n\t- Modify the ignore list of this check\n"
+        )
+
+        exit += 1
+
+    if exit == 0:
+        print(
+            "\n\n\033[32mINFO\033[0m Finished check_unused_files.py without any errors."
+        )
+
+    return exit
+
+
+if "__main__" == __name__:
+    sys.exit(main())

CI/physmon/phys_perf_mon.sh

@@ -217,38 +217,21 @@ function simulation() {
     config="CI/physmon/simulation_config.yml"
 
     Examples/Scripts/generic_plotter.py \
-        $outdir/particles_initial_${suffix}.root \
+        $outdir/particles_${suffix}.root \
         particles \
-        $outdir/particles_initial_${suffix}_hist.root \
+        $outdir/particles_${suffix}_hist.root \
         --silent \
-        --config CI/physmon/particles_initial_config.yml
+        --config $config
     ec=$(($ec | $?))
 
     # remove ntuple file because it's large
-    rm $outdir/particles_initial_${suffix}.root
+    rm $outdir/particles_${suffix}.root
 
     run_histcmp \
-        $outdir/particles_initial_${suffix}_hist.root \
-        $refdir/particles_initial_${suffix}_hist.root \
-        "Particles inital ${suffix}" \
-        particles_initial_${suffix}
-
-    Examples/Scripts/generic_plotter.py \
-        $outdir/particles_final_${suffix}.root \
-        particles \
-        $outdir/particles_final_${suffix}_hist.root \
-        --silent \
-        --config CI/physmon/particles_final_config.yml
-    ec=$(($ec | $?))
-
-    # remove ntuple file because it's large
-    rm $outdir/particles_final_${suffix}.root
-
-    run_histcmp \
-        $outdir/particles_final_${suffix}_hist.root \
-        $refdir/particles_final_${suffix}_hist.root \
-        "Particles final ${suffix}" \
-        particles_final_${suffix}
+        $outdir/particles_${suffix}_hist.root \
+        $refdir/particles_${suffix}_hist.root \
+        "Particles ${suffix}" \
+        particles_${suffix}
 }
 
 if [[ "$mode" == "all" || "$mode" == "fullchains" ]]; then
@@ -294,7 +277,7 @@ if [[ "$mode" == "all" || "$mode" == "fullchains" ]]; then
         vertexing \
         $outdir/performance_amvf_ttbar_hist.root \
         --silent \
-        --config CI/physmon/vertexing_config.yml
+        --config CI/physmon/vertexing_ttbar_config.yml
     ec=$(($ec | $?))
 
     Examples/Scripts/generic_plotter.py \
@@ -327,7 +310,7 @@ if [[ "$mode" == "all" || "$mode" == "fullchains" ]]; then
         vertexing \
         $outdir/performance_amvf_gridseeder_ttbar_hist.root \
         --silent \
-        --config CI/physmon/vertexing_config.yml
+        --config CI/physmon/vertexing_ttbar_config.yml
     ec=$(($ec | $?))
 
     # remove ntuple file because it's large