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1. bamsurgeon bamsurgeon Public

   tools for adding mutations to existing .bam files, used for testing mutation callers

   Python 235 86

2. tebreak tebreak Public

   Find and characterise transposable element insertions

   Python 21 6

3. tldr tldr Public

   Identify and annotate TE-mediated insertions in long-read sequence data

   Python 40 4

4. methylartist methylartist Public

   Tools for plotting methylation data in various ways

   Python 133 10

5. GRIPper GRIPper Public archive

   Find non-reference processed pseudogene insertions from discordant read pair mappings

   Python 5 4

6. methylartist-tests methylartist-tests Public

   Test data and examples for methylartist

   Shell 2