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extension
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baskooijman committed Oct 5, 2018
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Binary file modified allEco.mat
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60 changes: 60 additions & 0 deletions curation/get_eco.m
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Expand Up @@ -7358,6 +7358,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Sterna_dougallii'
climate = {'MA'};
ecozone = {'MC'};
habitat = {'0iMc'};
embryo = {'Tnsfm'};
migrate = {'Ml'};
food = {'biCvf'};
gender = {'Dg'};
reprod = {'O'};

case 'Thalasseus_sandvicensis'
climate = {'Dfb','Dfc'};
ecozone = {'MA'};
Expand Down Expand Up @@ -7548,6 +7558,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Haematopus_ostralegus'
climate = {'Cfb','Dfa','Dfb','Dwa','Dwb'};
ecozone = {'THp'};
habitat = {'0xTs','xiFm','xiFe'};
embryo = {'Tnsfm'};
migrate = {'Ms'};
food = {'biCim'};
gender = {'Dg'};
reprod = {'O'};

case 'Vanellus_vanellus'
climate = {'Cfb'};
ecozone = {'THp'};
Expand Down Expand Up @@ -7618,6 +7638,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Pluvialis_apricaria'
climate = {'ET','Dfc'};
ecozone = {'THp'};
habitat = {'0iTht'};
embryo = {'Tnsfm'};
migrate = {'Ml'};
food = {'biCi'};
gender = {'Dg'};
reprod = {'O'};

case 'Psophia_crepitans'
climate = {'Af','Am'};
ecozone = {'TN'};
Expand Down Expand Up @@ -7738,6 +7768,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Crex_crex'
climate = {'BWk','BSk','Cfb','Dfb'};
ecozone = {'THp'};
habitat = {'0iFm'};
embryo = {'Tnsfm'};
migrate = {'Ml'};
food = {'biCi','biHl'};
gender = {'Dg'};
reprod = {'O'};

case 'Phaethon_lepturus'
climate = {'MA'};
ecozone = {'MC'};
Expand Down Expand Up @@ -9008,6 +9048,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Amazona_finschi'
climate = {'Cwa','Cwb'};
ecozone = {'TN'};
habitat = {'0iTf','0iTi'};
embryo = {'Tnpf'};
migrate = {};
food = {'biHs'};
gender = {'Dg'};
reprod = {'O'};

case 'Psittrichas_fulgidus'
climate = {'Af'};
ecozone = {'TA'}; % endemic to New Guinea
Expand Down Expand Up @@ -9358,6 +9408,16 @@
gender = {'Dg'};
reprod = {'O'};

case 'Alauda_arvensis'
climate = {'B','C','D'};
ecozone = {'THp'};
habitat = {'0iTi','0iTs','0iTg'};
embryo = {'Tnsf'};
migrate = {'Ml'};
food = {'biCi','xiHs','xiHl'};
gender = {'Dg'};
reprod = {'O'};

case 'Delichon_urbicum'
climate = {'BSk','Cfb','Dfb','Dfc'};
ecozone = {'THp'};
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63 changes: 62 additions & 1 deletion curation/get_link.m
Original file line number Diff line number Diff line change
Expand Up @@ -5408,6 +5408,15 @@
id_avibase = '4D2FF6F13790ED7E';
id_birdlife = 'common-tern-sterna-hirundo';

case 'Sterna_dougallii'
id_CoL = 'e6cd6beff86e385e4d942021abacd2da';
id_WoRMS = '137160';
id_Taxo = '53866';
id_EoL = '1049641';
id_AnAge = taxon;
id_avibase = '74236837A4AFD042';
id_birdlife = 'roseate-tern-sterna-dougallii';

case 'Thalasseus_sandvicensis'
id_CoL = 'fd712ba9ea195d3cc049c283c6ba3caa';
id_WoRMS = '413044'; % unaccepted, to Sterna sandvicensis Latham, 1787
Expand Down Expand Up @@ -5586,6 +5595,15 @@
id_avibase = 'C078081EB45D895F';
id_birdlife = 'african-oystercatcher-haematopus-moquini';

case 'Haematopus_ostralegus'
id_CoL = 'aa9b32f4498c9918873c902d95302fac';
id_WoRMS = '147436';
id_Taxo = '53505';
id_EoL = '1049333';
id_AnAge = taxon;
id_avibase = 'ED66316522B99A30';
id_birdlife = 'eurasian-oystercatcher-haematopus-ostralegus';

case 'Vanellus_vanellus'
id_CoL = 'a72664542a6c3a33c679530309994536';
id_WoRMS = '159142';
Expand Down Expand Up @@ -5649,6 +5667,15 @@
id_avibase = '2143A8526CA7C809';
id_birdlife = 'american-golden-plover-pluvialis-dominica';

case 'Pluvialis_apricaria'
id_CoL = 'bc2553ab83451495ee121328c8d28762';
id_WoRMS = '159135';
id_Taxo = '53622';
id_EoL = '1049364';
id_AnAge = taxon;
id_avibase = '25A20BA6F7EA9D9A';
id_birdlife = 'eurasian-golden-plover-pluvialis-apricaria';

case 'Psophia_crepitans'
id_CoL = '79cc7ed2868e70fd1a9c47f97f9d2061';
id_Taxo = '53287';
Expand Down Expand Up @@ -5750,6 +5777,22 @@
id_Wiki = 'Grus_leucogeranus';
id_ADW = 'Grus_leucogeranus';

case 'Gallinula_chloropus'
id_CoL = '8c1a4e2718730f2ad6171f96fb6c6fa3';
id_Taxo = '53395';
id_EoL = '1048567';
id_AnAge = '';
id_avibase = '8F82FF8C30667D90';
id_birdlife = 'common-moorhen-gallinula-chloropus';

case 'Crex_crex'
id_CoL = '81f2c86266e0066201e927f7bc2d8265';
id_Taxo = '53351';
id_EoL = '1049299';
id_AnAge = taxon; % not present 2018/10/05
id_avibase = '7E2572426E200D08';
id_birdlife = 'corncrake-crex-crex';

case 'Phaethon_lepturus'
id_CoL = '9c0e9cb143508bda222bd0adec5383db';
id_WoRMS = '212594';
Expand Down Expand Up @@ -6847,7 +6890,16 @@
id_AnAge = taxon;
id_avibase = '0F2066D5BB706CD2';
id_birdlife = 'orange-winged-amazon-amazona-amazonica';
id_ADW = 'not present at 2018/07/28';
id_ADW = ''; % not present at 2018/07/2';

case 'Amazona_finschi'
id_CoL = 'a17c95bc09df808e3c0ee4f0343e44b5';
id_Taxo = '107781';
id_EoL = '1178070';
id_AnAge = taxon;
id_avibase = '66C32CC9A92F6633';
id_birdlife = 'lilac-crowned-amazon-amazona-finschi';
id_ADW = ''; % not present at 2018/10/04';

case 'Psittrichas_fulgidus'
id_CoL = 'c4e116ad8d3e8bcbf9c175f5768134c0';
Expand Down Expand Up @@ -7131,6 +7183,15 @@
id_avibase = 'A4EBA919FCAFED5E';
id_birdlife = 'coal-tit-periparus-ater';

case 'Alauda_arvensis'
id_CoL = 'f42843b15106ffcf24b9e321c81480f6';
id_Taxo = '56272';
id_EoL = '916864';
id_AnAge = taxon;
id_avibase = '2D9A361995111F42';
id_birdlife = 'eurasian-skylark-alauda-arvensis';
id_ADW = ''; % not present 2018/10/04

case 'Delichon_urbicum'
id_CoL = '1f9be412a6454b0bfd18f48e515e2592';
id_Taxo = '1125977';
Expand Down
1 change: 1 addition & 0 deletions taxa/Alauda.txt
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@@ -0,0 +1 @@
Alauda_arvensis
1 change: 1 addition & 0 deletions taxa/Alaudidae.txt
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@@ -0,0 +1 @@
Alauda
1 change: 1 addition & 0 deletions taxa/Amazona.txt
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@@ -1 +1,2 @@
Amazona_amazonica
Amazona_finschi
1 change: 1 addition & 0 deletions taxa/Crex.txt
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@@ -0,0 +1 @@
Crex_crex
1 change: 1 addition & 0 deletions taxa/Haematopus.txt
Original file line number Diff line number Diff line change
@@ -1 +1,2 @@
Haematopus_moquini
Haematopus_ostralegus
1 change: 1 addition & 0 deletions taxa/Pluvialis.txt
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@@ -1 +1,2 @@
Pluvialis_dominica
Pluvialis_apricaria
1 change: 1 addition & 0 deletions taxa/Rallidae.txt
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@@ -1 +1,2 @@
Gallinula
Crex
1 change: 1 addition & 0 deletions taxa/Sterna.txt
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@@ -1,2 +1,3 @@
Sterna_paradisaea
Sterna_hirundo
Sterna_dougallii
1 change: 1 addition & 0 deletions taxa/Sylvioidea.txt
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@@ -1,3 +1,4 @@
Alaudidae
Hirundinidae
Sylvidae
Phylloscopidae
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