FIX: failed genome variant search using internal id (#83)

* FIX: convert error indices by pydantic to str form to generate the error messages

* Update documentation

* Update AUTH-GUIDE.md

* DEV: return resouce list for filtering_terms endpoints. updated data strcuture for Dynamodb Ontologies table

* Fixed map endpoint by removing static /api in the base URL mid-path (#81)

* This requires when registering into Beacon Network. It cannot
  be mis-matched with the actual deployed endpoints from terraform.

* DEV: Version pinning and layer upgrade

Python modules layer was updated, especially pydantic to V2. Versions are pinned in the init.sh file to avoid breaking changes affecting the deployments.

* FIX: variant search not working with id

Variant search used chrom name inside VCF file to search
this was not captured in get_matching_chromosome fucntion in shared.utils
added check to return chromosome name if VCF chromosome has same name as searched chromosome

---------

Co-authored-by: Victor San Kho Lin <victor@sankholin.com>

shared_resources/python-modules/python/shared/utils/chrom_matching.py

@@ -71,7 +71,9 @@ def get_vcf_chromosomes(vcf):
 
 def get_matching_chromosome(vcf_chromosomes, target_chromosome):
     for vcf_chrom in vcf_chromosomes:
-        if _match_chromosome_name(vcf_chrom) == target_chromosome:
+        if vcf_chrom == target_chromosome:
+            return vcf_chrom
+        elif _match_chromosome_name(vcf_chrom) == target_chromosome:
             return vcf_chrom
     return None