Bump ruff version #4768

Job	Run time
install-with-conda (3.9, true)	32s
install-with-pip	25s
install-with-conda (3.10, true)	42s
install-with-pip ([atomic_tools,docs,notebook,rest,tests,tui])	1m 24s
install-with-conda (3.11, true)	37s
install-with-conda (3.12, true)	33s
install-with-conda (false)	46s
validate-dependency-specification	12s
create-conda-environment	42s
resolve-pip-dependencies (3.9)	33s
resolve-pip-dependencies (3.10)	33s
resolve-pip-dependencies (3.11)	30s
resolve-pip-dependencies (3.12)	51s
tests (3.9)	26m 44s
tests (3.10)	26m 57s
tests (3.11)	24m 46s
tests (3.12)	28m 31s
check-requirements	9s
	1h 55m 27s

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