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🎉 source: implementation for mysql cdc (#3505)
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* source: implementation for mysql cdc

* add target file and position

* dont want to add file in this PR

* refine tests + add comments

* fix typo

* address review comments

* fix formatting error

* resolve conflicts

* update docs + bump docker minor version

* remove un-necessary new lines + add multiple checks for cdc

* address review comments from Davin

* increase the version in source_definitions.yaml

* rebuild seed
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subodh1810 authored May 24, 2021
1 parent df3d376 commit 7ccc4fa
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Showing 21 changed files with 2,216 additions and 20 deletions.
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Expand Up @@ -2,7 +2,7 @@
"sourceDefinitionId": "435bb9a5-7887-4809-aa58-28c27df0d7ad",
"name": "MySQL",
"dockerRepository": "airbyte/source-mysql",
"dockerImageTag": "0.3.0",
"dockerImageTag": "0.3.1",
"documentationUrl": "https://docs.airbyte.io/integrations/sources/mysql",
"icon": "mysql.svg"
}
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Expand Up @@ -61,7 +61,7 @@
- sourceDefinitionId: 435bb9a5-7887-4809-aa58-28c27df0d7ad
name: MySQL
dockerRepository: airbyte/source-mysql
dockerImageTag: 0.3.0
dockerImageTag: 0.3.1
documentationUrl: https://docs.airbyte.io/integrations/sources/mysql
icon: mysql.svg
- sourceDefinitionId: 2470e835-feaf-4db6-96f3-70fd645acc77
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Expand Up @@ -79,6 +79,8 @@ public abstract class SourceAcceptanceTest {
public static final String CDC_LSN = "_ab_cdc_lsn";
public static final String CDC_UPDATED_AT = "_ab_cdc_updated_at";
public static final String CDC_DELETED_AT = "_ab_cdc_deleted_at";
public static final String CDC_LOG_FILE = "_ab_cdc_log_file";
public static final String CDC_LOG_POS = "_ab_cdc_log_pos";

private static final long JOB_ID = 0L;
private static final int JOB_ATTEMPT = 0;
Expand Down Expand Up @@ -472,6 +474,8 @@ private AirbyteRecordMessage pruneEmittedAt(AirbyteRecordMessage m) {
private AirbyteRecordMessage pruneCdcMetadata(AirbyteRecordMessage m) {
final AirbyteRecordMessage clone = Jsons.clone(m);
((ObjectNode) clone.getData()).remove(CDC_LSN);
((ObjectNode) clone.getData()).remove(CDC_LOG_FILE);
((ObjectNode) clone.getData()).remove(CDC_LOG_POS);
((ObjectNode) clone.getData()).remove(CDC_UPDATED_AT);
((ObjectNode) clone.getData()).remove(CDC_DELETED_AT);
return clone;
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Expand Up @@ -87,6 +87,8 @@ public abstract class AbstractJdbcSource extends BaseConnector implements Source
public static final String CDC_LSN = "_ab_cdc_lsn";
public static final String CDC_UPDATED_AT = "_ab_cdc_updated_at";
public static final String CDC_DELETED_AT = "_ab_cdc_deleted_at";
public static final String CDC_LOG_FILE = "_ab_cdc_log_file";
public static final String CDC_LOG_POS = "_ab_cdc_log_pos";

private static final String JDBC_COLUMN_DATABASE_NAME = "TABLE_CAT";
private static final String JDBC_COLUMN_SCHEMA_NAME = "TABLE_SCHEM";
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2 changes: 1 addition & 1 deletion airbyte-integrations/connectors/source-mysql/Dockerfile
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Expand Up @@ -8,6 +8,6 @@ COPY build/distributions/${APPLICATION}*.tar ${APPLICATION}.tar

RUN tar xf ${APPLICATION}.tar --strip-components=1

LABEL io.airbyte.version=0.3.0
LABEL io.airbyte.version=0.3.1

LABEL io.airbyte.name=airbyte/source-mysql
7 changes: 5 additions & 2 deletions airbyte-integrations/connectors/source-mysql/build.gradle
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Expand Up @@ -11,18 +11,21 @@ application {
dependencies {
implementation project(':airbyte-db')
implementation project(':airbyte-integrations:bases:base-java')
implementation project(':airbyte-protocol:models')
implementation project(':airbyte-integrations:connectors:source-jdbc')
implementation project(':airbyte-protocol:models')

implementation 'io.debezium:debezium-api:1.4.2.Final'
implementation 'io.debezium:debezium-connector-mysql:1.4.2.Final'
implementation 'io.debezium:debezium-embedded:1.4.2.Final'
implementation 'mysql:mysql-connector-java:8.0.22'
implementation 'org.apache.commons:commons-lang3:3.11'

testImplementation testFixtures(project(':airbyte-integrations:connectors:source-jdbc'))

testImplementation 'org.apache.commons:commons-lang3:3.11'
testImplementation 'org.testcontainers:mysql:1.15.1'

integrationTestJavaImplementation project(':airbyte-integrations:bases:standard-source-test')
integrationTestJavaImplementation project(':airbyte-integrations:connectors:source-mysql')

implementation files(project(':airbyte-integrations:bases:base-java').airbyteDocker.outputs)
integrationTestJavaImplementation files(project(':airbyte-integrations:bases:base-java').airbyteDocker.outputs)
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@@ -0,0 +1,178 @@
/*
* MIT License
*
* Copyright (c) 2020 Airbyte
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*/

package io.airbyte.integrations.source.mysql;

import static io.airbyte.integrations.source.mysql.MySqlSource.MYSQL_CDC_OFFSET;

import com.fasterxml.jackson.databind.JsonNode;
import com.google.common.base.Preconditions;
import io.airbyte.commons.json.Jsons;
import io.airbyte.integrations.source.jdbc.JdbcStateManager;
import io.airbyte.integrations.source.jdbc.models.CdcState;
import java.io.EOFException;
import java.io.IOException;
import java.io.ObjectOutputStream;
import java.nio.ByteBuffer;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.nio.file.NoSuchFileException;
import java.nio.file.Path;
import java.util.Collections;
import java.util.HashMap;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.commons.io.FileUtils;
import org.apache.kafka.connect.errors.ConnectException;
import org.apache.kafka.connect.util.SafeObjectInputStream;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

/**
* This class handles reading and writing a debezium offset file. In many cases it is duplicating
* logic in debezium because that logic is not exposed in the public API. We mostly treat the
* contents of this state file like a black box. We know it is a Map<ByteBuffer, Bytebuffer>. We
* deserialize it to a Map<String, String> so that the state file can be human readable. If we ever
* discover that any of the contents of these offset files is not string serializable we will likely
* have to drop the human readability support and just base64 encode it.
*/
public class AirbyteFileOffsetBackingStore {

private static final Logger LOGGER = LoggerFactory.getLogger(AirbyteFileOffsetBackingStore.class);

private final Path offsetFilePath;

public AirbyteFileOffsetBackingStore(final Path offsetFilePath) {
this.offsetFilePath = offsetFilePath;
}

public Path getOffsetFilePath() {
return offsetFilePath;
}

public CdcState read() {
final Map<ByteBuffer, ByteBuffer> raw = load();

final Map<String, String> mappedAsStrings = raw.entrySet().stream().collect(Collectors.toMap(
e -> byteBufferToString(e.getKey()),
e -> byteBufferToString(e.getValue())));
final JsonNode asJson = Jsons.jsonNode(mappedAsStrings);

LOGGER.info("debezium state: {}", asJson);

return new CdcState().withState(asJson);
}

public Map<String, String> readMap() {
final Map<ByteBuffer, ByteBuffer> raw = load();

return raw.entrySet().stream().collect(Collectors.toMap(
e -> byteBufferToString(e.getKey()),
e -> byteBufferToString(e.getValue())));
}

@SuppressWarnings("unchecked")
public void persist(CdcState cdcState) {
final Map<String, String> mapAsString =
cdcState != null && cdcState.getState() != null ? Jsons.object(cdcState.getState().get(MYSQL_CDC_OFFSET), Map.class) : Collections.emptyMap();
final Map<ByteBuffer, ByteBuffer> mappedAsStrings = mapAsString.entrySet().stream().collect(Collectors.toMap(
e -> stringToByteBuffer(e.getKey()),
e -> stringToByteBuffer(e.getValue())));

FileUtils.deleteQuietly(offsetFilePath.toFile());
save(mappedAsStrings);
}

private static String byteBufferToString(ByteBuffer byteBuffer) {
Preconditions.checkNotNull(byteBuffer);
return new String(byteBuffer.array(), StandardCharsets.UTF_8);
}

private static ByteBuffer stringToByteBuffer(String s) {
Preconditions.checkNotNull(s);
return ByteBuffer.wrap(s.getBytes(StandardCharsets.UTF_8));
}

/**
* See FileOffsetBackingStore#load - logic is mostly borrowed from here. duplicated because this
* method is not public.
*/
@SuppressWarnings("unchecked")
private Map<ByteBuffer, ByteBuffer> load() {
try (final SafeObjectInputStream is = new SafeObjectInputStream(Files.newInputStream(offsetFilePath))) {
final Object obj = is.readObject();
if (!(obj instanceof HashMap))
throw new ConnectException("Expected HashMap but found " + obj.getClass());
final Map<byte[], byte[]> raw = (Map<byte[], byte[]>) obj;
final Map<ByteBuffer, ByteBuffer> data = new HashMap<>();
for (Map.Entry<byte[], byte[]> mapEntry : raw.entrySet()) {
final ByteBuffer key = (mapEntry.getKey() != null) ? ByteBuffer.wrap(mapEntry.getKey()) : null;
final ByteBuffer value = (mapEntry.getValue() != null) ? ByteBuffer.wrap(mapEntry.getValue()) : null;
data.put(key, value);
}

return data;
} catch (NoSuchFileException | EOFException e) {
// NoSuchFileException: Ignore, may be new.
// EOFException: Ignore, this means the file was missing or corrupt
return Collections.emptyMap();
} catch (IOException | ClassNotFoundException e) {
throw new ConnectException(e);
}
}

/**
* See FileOffsetBackingStore#save - logic is mostly borrowed from here. duplicated because this
* method is not public.
*/
private void save(Map<ByteBuffer, ByteBuffer> data) {
try (ObjectOutputStream os = new ObjectOutputStream(Files.newOutputStream(offsetFilePath))) {
Map<byte[], byte[]> raw = new HashMap<>();
for (Map.Entry<ByteBuffer, ByteBuffer> mapEntry : data.entrySet()) {
byte[] key = (mapEntry.getKey() != null) ? mapEntry.getKey().array() : null;
byte[] value = (mapEntry.getValue() != null) ? mapEntry.getValue().array() : null;
raw.put(key, value);
}
os.writeObject(raw);
} catch (IOException e) {
throw new ConnectException(e);
}
}

static AirbyteFileOffsetBackingStore initializeState(JdbcStateManager stateManager) {
final Path cdcWorkingDir;
try {
cdcWorkingDir = Files.createTempDirectory(Path.of("/tmp"), "cdc-state-offset");
} catch (IOException e) {
throw new RuntimeException(e);
}
final Path cdcOffsetFilePath = cdcWorkingDir.resolve("offset.dat");

final AirbyteFileOffsetBackingStore offsetManager = new AirbyteFileOffsetBackingStore(
cdcOffsetFilePath);
offsetManager.persist(stateManager.getCdcStateManager().getCdcState());
return offsetManager;
}

}
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