Mysql source: mark unknown column exception as config error #20289

sashaNeshcheret · 2022-12-09T11:02:37Z

What

Mark unknown column exception as config error for Mysql source

How

Add method that check if catched exception contains "Unknown column in 'field list'"

🚨 User Impact 🚨

Are there any breaking changes? What is the end result perceived by the user? If yes, please merge this PR with the 🚨🚨 emoji so changelog authors can further highlight this if needed.

Pre-merge Checklist

Expand the relevant checklist and delete the others.

New Connector

Community member or Airbyter

Airbyter

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Create a non-forked branch based on this PR and test the below items on it
Build is successful
If new credentials are required for use in CI, add them to GSM. Instructions.
/test connector=connectors/<name> command is passing
New Connector version released on Dockerhub by running the /publish command described here
After the connector is published, connector added to connector index as described here
Seed specs have been re-generated by building the platform and committing the changes to the seed spec files, as described here

Updating a connector

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Grant edit access to maintainers (instructions)
Secrets in the connector's spec are annotated with airbyte_secret
Unit & integration tests added and passing. Community members, please provide proof of success locally e.g: screenshot or copy-paste unit, integration, and acceptance test output. To run acceptance tests for a Python connector, follow instructions in the README. For java connectors run ./gradlew :airbyte-integrations:connectors:<name>:integrationTest.
Code reviews completed
Documentation updated
- Connector's README.md
- Connector's bootstrap.md. See description and examples
- Changelog updated in docs/integrations/<source or destination>/<name>.md including changelog. See changelog example
PR name follows PR naming conventions

Airbyter

If this is a community PR, the Airbyte engineer reviewing this PR is responsible for the below items.

Create a non-forked branch based on this PR and test the below items on it
Build is successful
If new credentials are required for use in CI, add them to GSM. Instructions.
/test connector=connectors/<name> command is passing
New Connector version released on Dockerhub and connector version bumped by running the /publish command described here

Connector Generator

Issue acceptance criteria met
PR name follows PR naming conventions
If adding a new generator, add it to the list of scaffold modules being tested
The generator test modules (all connectors with -scaffold in their name) have been updated with the latest scaffold by running ./gradlew :airbyte-integrations:connector-templates:generator:testScaffoldTemplates then checking in your changes
Documentation which references the generator is updated as needed

Tests

Unit

Put your unit tests output here.

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Put your integration tests output here.

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sashaNeshcheret · 2022-12-09T11:03:07Z

/test connector=connectors/source-mysql

🕑 connectors/source-mysql https://github.com/airbytehq/airbyte/actions/runs/3656786557
✅ connectors/source-mysql https://github.com/airbytehq/airbyte/actions/runs/3656786557
Python tests coverage:

	 Name                                                 Stmts   Miss  Cover   Missing
	 ----------------------------------------------------------------------------------
	 source_acceptance_test/base.py                          12      4    67%   16-19
	 source_acceptance_test/config.py                       140      5    96%   87, 93, 238, 242-243
	 source_acceptance_test/conftest.py                     208     92    56%   36, 42-44, 49, 54, 77, 83, 89-91, 110, 115-117, 123-125, 131-132, 137-138, 143, 149, 158-167, 173-178, 193, 217, 248, 254, 262-267, 275-280, 288-301, 306-312, 319-330, 337-353
	 source_acceptance_test/plugin.py                        69     25    64%   22-23, 31, 36, 120-140, 144-148
	 source_acceptance_test/tests/test_core.py              398    111    72%   53, 58, 87-95, 100-107, 111-112, 116-117, 299, 337-354, 363-371, 375-380, 386, 419-424, 462-469, 512-514, 517, 582-590, 602-605, 610, 666-667, 673, 676, 712-722, 735-760
	 source_acceptance_test/tests/test_incremental.py       158     14    91%   52-59, 64-77, 240
	 source_acceptance_test/utils/asserts.py                 39      2    95%   62-63
	 source_acceptance_test/utils/common.py                  94     10    89%   16-17, 32-38, 72, 75
	 source_acceptance_test/utils/compare.py                 62     23    63%   21-51, 68, 97-99
	 source_acceptance_test/utils/connector_runner.py       133     33    75%   24-27, 46-47, 50-54, 57-58, 73-75, 78-80, 83-85, 88-90, 93-95, 124-125, 159-161, 208
	 source_acceptance_test/utils/json_schema_helper.py     107     13    88%   30-31, 38, 41, 65-68, 96, 120, 192-194
	 ----------------------------------------------------------------------------------
	 TOTAL                                                 1599    332    79%

Build Passed

Test summary info:

=========================== short test summary info ============================
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestConnection.test_check: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestDiscovery.test_discover: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestBasicRead.test_read: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestFullRefresh.test_sequential_reads: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestIncremental.test_two_sequential_reads: not found in the config.
================= 14 passed, 5 skipped, 21 warnings in 31.08s ==================

sashaNeshcheret · 2022-12-09T11:04:04Z

/test connector=connectors/source-mysql-strict-encrypt

🕑 connectors/source-mysql-strict-encrypt https://github.com/airbytehq/airbyte/actions/runs/3656793531
❌ connectors/source-mysql-strict-encrypt https://github.com/airbytehq/airbyte/actions/runs/3656793531
🐛

github-actions · 2022-12-09T11:04:09Z

Affected Connector Report

NOTE ⚠️ Changes in this PR affect the following connectors. Make sure to do the following as needed:

Run integration tests
Bump connector or module version
Add changelog
Publish the new version

❌ Sources (31)

Connector	Version	Changelog	Publish
`source-alloydb`	`1.0.33`	❌ (changelog missing)	✅
`source-alloydb-strict-encrypt`	`1.0.33`	🔵 (ignored)	🔵 (ignored)
`source-bigquery`	`0.2.3`	✅	✅
`source-clickhouse`	`0.1.14`	✅	✅
`source-clickhouse-strict-encrypt`	`0.1.14`	🔵 (ignored)	🔵 (ignored)
`source-cockroachdb`	`0.1.18`	✅	✅
`source-cockroachdb-strict-encrypt`	`0.1.18`	🔵 (ignored)	🔵 (ignored)
`source-db2`	`0.1.16`	✅	✅
`source-db2-strict-encrypt`	`0.1.16`	🔵 (ignored)	🔵 (ignored)
`source-dynamodb`	`0.1.0`	✅	✅
`source-e2e-test`	`2.1.3`	✅	✅
`source-e2e-test-cloud`	`2.1.1`	⚠ (doc not found)	⚠ (not in seed)
`source-elasticsearch`	`0.1.1`	✅	✅
`source-jdbc`	`0.3.5`	⚠ (doc not found)	⚠ (not in seed)
`source-kafka`	`0.2.3`	✅	✅
`source-mongodb-strict-encrypt`	`0.1.19`	🔵 (ignored)	🔵 (ignored)
`source-mongodb-v2`	`0.1.19`	✅	✅
`source-mssql`	`0.4.26`	✅	✅
`source-mssql-strict-encrypt`	`0.4.26`	🔵 (ignored)	🔵 (ignored)
`source-mysql`	`1.0.17`	✅	✅
`source-mysql-strict-encrypt`	`1.0.17`	🔵 (ignored)	🔵 (ignored)
`source-oracle`	`0.3.21`	✅	✅
`source-oracle-strict-encrypt`	`0.3.21`	🔵 (ignored)	🔵 (ignored)
`source-postgres`	`1.0.33`	✅	✅
`source-postgres-strict-encrypt`	`1.0.33`	🔵 (ignored)	🔵 (ignored)
`source-redshift`	`0.3.15`	✅	✅
`source-relational-db`	`0.3.1`	⚠ (doc not found)	⚠ (not in seed)
`source-scaffold-java-jdbc`	`0.1.0`	⚠ (doc not found)	⚠ (not in seed)
`source-sftp`	`0.1.2`	✅	✅
`source-snowflake`	`0.1.26`	✅	✅
`source-tidb`	`0.2.1`	✅	✅

See "Actionable Items" below for how to resolve warnings and errors.

❌ Destinations (46)

Connector	Version	Changelog	Publish
`destination-azure-blob-storage`	`0.1.6`	✅	✅
`destination-bigquery`	`1.2.8`	✅	✅
`destination-bigquery-denormalized`	`1.2.8`	✅	✅
`destination-cassandra`	`0.1.4`	✅	✅
`destination-clickhouse`	`0.2.1`	✅	✅
`destination-clickhouse-strict-encrypt`	`0.2.1`	🔵 (ignored)	🔵 (ignored)
`destination-csv`	`0.2.10`	✅	✅
`destination-databricks`	`0.3.1`	✅	✅
`destination-dev-null`	`0.2.7`	🔵 (ignored)	🔵 (ignored)
`destination-doris`	`0.1.0`	✅	✅
`destination-dynamodb`	`0.1.7`	✅	✅
`destination-e2e-test`	`0.2.4`	✅	✅
`destination-elasticsearch`	`0.1.6`	✅	✅
`destination-elasticsearch-strict-encrypt`	`0.1.6`	🔵 (ignored)	🔵 (ignored)
`destination-gcs`	`0.2.12`	✅	✅
`destination-iceberg`	`0.1.0`	✅	✅
`destination-jdbc`	`0.3.14`	🔵 (ignored)	🔵 (ignored)
`destination-kafka`	`0.1.10`	✅	✅
`destination-keen`	`0.2.4`	✅	✅
`destination-kinesis`	`0.1.5`	✅	✅
`destination-local-json`	`0.2.11`	✅	✅
`destination-mariadb-columnstore`	`0.1.7`	✅	✅
`destination-mongodb`	`0.1.9`	✅	✅
`destination-mongodb-strict-encrypt`	`0.1.9`	🔵 (ignored)	🔵 (ignored)
`destination-mqtt`	`0.1.3`	✅	✅
`destination-mssql`	`0.1.22`	✅	✅
`destination-mssql-strict-encrypt`	`0.1.22`	🔵 (ignored)	🔵 (ignored)
`destination-mysql`	`0.1.20`	✅	✅
`destination-mysql-strict-encrypt`	❌ `0.1.21` (mismatch: `0.1.20`)	🔵 (ignored)	🔵 (ignored)
`destination-oracle`	`0.1.19`	✅	✅
`destination-oracle-strict-encrypt`	`0.1.19`	🔵 (ignored)	🔵 (ignored)
`destination-postgres`	`0.3.26`	✅	✅
`destination-postgres-strict-encrypt`	`0.3.26`	🔵 (ignored)	🔵 (ignored)
`destination-pubsub`	`0.2.0`	✅	✅
`destination-pulsar`	`0.1.3`	✅	✅
`destination-r2`	`0.1.0`	✅	✅
`destination-redis`	`0.1.4`	✅	✅
`destination-redpanda`	`0.1.0`	✅	✅
`destination-redshift`	`0.3.51`	✅	✅
`destination-rockset`	`0.1.4`	✅	✅
`destination-s3`	`0.3.17`	✅	✅
`destination-s3-glue`	`0.1.1`	✅	✅
`destination-scylla`	`0.1.3`	✅	✅
`destination-snowflake`	`0.4.40`	✅	✅
`destination-tidb`	`0.1.0`	✅	✅
`destination-yugabytedb`	`0.1.0`	✅	✅

See "Actionable Items" below for how to resolve warnings and errors.

✅ Other Modules (0)

Actionable Items

(click to expand)

Category	Status	Actionable Item
Version	❌ mismatch	The version of the connector is different from its normal variant. Please bump the version of the connector.
	⚠ doc not found	The connector does not seem to have a documentation file. This can be normal (e.g. basic connector like `source-jdbc` is not published or documented). Please double-check to make sure that it is not a bug.
Changelog	⚠ doc not found	The connector does not seem to have a documentation file. This can be normal (e.g. basic connector like `source-jdbc` is not published or documented). Please double-check to make sure that it is not a bug.
	❌ changelog missing	There is no chnagelog for the current version of the connector. If you are the author of the current version, please add a changelog.
Publish	⚠ not in seed	The connector is not in the seed file (e.g. `source_definitions.yaml`), so its publication status cannot be checked. This can be normal (e.g. some connectors are cloud-specific, and only listed in the cloud seed file). Please double-check to make sure that it is not a bug.
	❌ diff seed version	The connector exists in the seed file, but the latest version is not listed there. This usually means that the latest version is not published. Please use the `/publish` command to publish the latest version.

…wn-colunmn-exeption

sashaNeshcheret · 2022-12-12T12:27:09Z

/test connector=connectors/source-mysql-strict-encrypt

🕑 connectors/source-mysql-strict-encrypt https://github.com/airbytehq/airbyte/actions/runs/3675750193
✅ connectors/source-mysql-strict-encrypt https://github.com/airbytehq/airbyte/actions/runs/3675750193
No Python unittests run

Build Passed

Test summary info:

All Passed

sashaNeshcheret · 2022-12-12T12:27:17Z

/test connector=connectors/source-mysql

🕑 connectors/source-mysql https://github.com/airbytehq/airbyte/actions/runs/3675750868
✅ connectors/source-mysql https://github.com/airbytehq/airbyte/actions/runs/3675750868
Python tests coverage:

	 Name                                                 Stmts   Miss  Cover   Missing
	 ----------------------------------------------------------------------------------
	 source_acceptance_test/base.py                          12      4    67%   16-19
	 source_acceptance_test/config.py                       140      5    96%   87, 93, 238, 242-243
	 source_acceptance_test/conftest.py                     208     92    56%   36, 42-44, 49, 54, 77, 83, 89-91, 110, 115-117, 123-125, 131-132, 137-138, 143, 149, 158-167, 173-178, 193, 217, 248, 254, 262-267, 275-280, 288-301, 306-312, 319-330, 337-353
	 source_acceptance_test/plugin.py                        69     25    64%   22-23, 31, 36, 120-140, 144-148
	 source_acceptance_test/tests/test_core.py              398    111    72%   53, 58, 87-95, 100-107, 111-112, 116-117, 299, 337-354, 363-371, 375-380, 386, 419-424, 462-469, 512-514, 517, 582-590, 602-605, 610, 666-667, 673, 676, 712-722, 735-760
	 source_acceptance_test/tests/test_incremental.py       158     14    91%   52-59, 64-77, 240
	 source_acceptance_test/utils/asserts.py                 39      2    95%   62-63
	 source_acceptance_test/utils/common.py                  94     10    89%   16-17, 32-38, 72, 75
	 source_acceptance_test/utils/compare.py                 62     23    63%   21-51, 68, 97-99
	 source_acceptance_test/utils/connector_runner.py       133     33    75%   24-27, 46-47, 50-54, 57-58, 73-75, 78-80, 83-85, 88-90, 93-95, 124-125, 159-161, 208
	 source_acceptance_test/utils/json_schema_helper.py     107     13    88%   30-31, 38, 41, 65-68, 96, 120, 192-194
	 ----------------------------------------------------------------------------------
	 TOTAL                                                 1599    332    79%

Build Passed

Test summary info:

=========================== short test summary info ============================
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestConnection.test_check: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestDiscovery.test_discover: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestBasicRead.test_read: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestFullRefresh.test_sequential_reads: not found in the config.
SKIPPED [1] ../usr/local/lib/python3.9/site-packages/source_acceptance_test/plugin.py:63: Skipping TestIncremental.test_two_sequential_reads: not found in the config.
================= 14 passed, 5 skipped, 21 warnings in 29.07s ==================

…sql-source-handle-unknown-colunmn-exeption # Conflicts: # docs/integrations/sources/mysql.md

sashaNeshcheret · 2022-12-13T15:50:27Z

/publish connector=connectors/source-mysql

🕑 Publishing the following connectors:
connectors/source-mysql
https://github.com/airbytehq/airbyte/actions/runs/3687025303

Connector	Did it publish?	Were definitions generated?
connectors/source-mysql	❌	❌

if you have connectors that successfully published but failed definition generation, follow step 4 here ▶️

sashaNeshcheret · 2022-12-13T15:50:37Z

/publish connector=connectors/source-mysql-strict-encrypt

🕑 Publishing the following connectors:
connectors/source-mysql-strict-encrypt
https://github.com/airbytehq/airbyte/actions/runs/3687025621

Connector	Did it publish?	Were definitions generated?
connectors/source-mysql-strict-encrypt	✅	❌

if you have connectors that successfully published but failed definition generation, follow step 4 here ▶️

…wn-colunmn-exeption

akashkulk

Were you able to reproduce this issue and test the fix?

sashaNeshcheret · 2022-12-13T17:30:55Z

@akashkulk No, it was not reproduced, i tried delete columns, also tried to create view and delete column from table that is source for view but without any success, also added some time sleeping, do you have concerns about it?

…ndle-unknown-colunmn-exeption' into omneshcheret/326-mysql-source-handle-unknown-colunmn-exeption

…sql-source-handle-unknown-colunmn-exeption

…ndle-unknown-colunmn-exeption' into omneshcheret/326-mysql-source-handle-unknown-colunmn-exeption

subodh1810 · 2022-12-14T07:51:01Z

@sashaNeshcheret see this https://airbytehq-team.slack.com/archives/C03VDJ4FMJB/p1671004163072299?thread_ts=1670961909.354699&cid=C03VDJ4FMJB

sashaNeshcheret · 2022-12-14T08:34:57Z

/publish connector=connectors/source-mysql

🕑 Publishing the following connectors:
connectors/source-mysql
https://github.com/airbytehq/airbyte/actions/runs/3693092748

Connector	Did it publish?	Were definitions generated?
connectors/source-mysql	✅	✅

if you have connectors that successfully published but failed definition generation, follow step 4 here ▶️

sashaNeshcheret added 2 commits December 9, 2022 11:37

Source mysql: mark unknown column exception as config error

70f13d7

Source mysql: format code

1f40242

sashaNeshcheret requested a review from a team as a code owner December 9, 2022 11:02

Merge branch 'master' into omneshcheret/326-mysql-source-handle-unkno…

221831a

…wn-colunmn-exeption

rodireich approved these changes Dec 12, 2022

View reviewed changes

Source mysql: bump version

2923465

octavia-squidington-iv added area/connectors Connector related issues area/documentation Improvements or additions to documentation connectors/source/mysql connectors/source/mysql-strict-encrypt labels Dec 13, 2022

sashaNeshcheret added 2 commits December 13, 2022 16:25

Merge remote-tracking branch 'origin/master' into omneshcheret/326-my…

e843936

…sql-source-handle-unknown-colunmn-exeption # Conflicts: # docs/integrations/sources/mysql.md

Source mysql: bump version

0a62d07

Merge branch 'master' into omneshcheret/326-mysql-source-handle-unkno…

0c817b2

…wn-colunmn-exeption

akashkulk reviewed Dec 13, 2022

View reviewed changes

sashaNeshcheret added 2 commits December 13, 2022 20:09

Source mysql: bump spec and definition version

c2b344d

Merge remote-tracking branch 'origin/omneshcheret/326-mysql-source-ha…

c2459d3

…ndle-unknown-colunmn-exeption' into omneshcheret/326-mysql-source-handle-unknown-colunmn-exeption

sashaNeshcheret temporarily deployed to more-secrets December 13, 2022 19:11 — with GitHub Actions Inactive

sashaNeshcheret added 3 commits December 13, 2022 21:23

Merge remote-tracking branch 'origin/master' into omneshcheret/326-my…

3b2176f

…sql-source-handle-unknown-colunmn-exeption

Source mysql: bump spec and definition version

230146c

Merge remote-tracking branch 'origin/omneshcheret/326-mysql-source-ha…

5838fb9

…ndle-unknown-colunmn-exeption' into omneshcheret/326-mysql-source-handle-unknown-colunmn-exeption

sashaNeshcheret temporarily deployed to more-secrets December 13, 2022 20:35 — with GitHub Actions Inactive

sashaNeshcheret added 2 commits December 13, 2022 21:38

Source mysql: revert spec and definition version with unfamiliar changes

d41fbe5

Source mysql: bump spec and definition version

958db5a

sashaNeshcheret temporarily deployed to more-secrets December 13, 2022 20:46 — with GitHub Actions Inactive

Source mysql: revert manually bumped spec and definition version

f83ebb2

auto-bump connector version

9918dbf

octavia-squidington-iii temporarily deployed to more-secrets December 14, 2022 10:21 — with GitHub Actions Inactive

octavia-squidington-iii temporarily deployed to more-secrets December 14, 2022 10:22 — with GitHub Actions Inactive

sashaNeshcheret merged commit 9366b12 into master Dec 14, 2022

sashaNeshcheret deleted the omneshcheret/326-mysql-source-handle-unknown-colunmn-exeption branch December 14, 2022 11:00

github-actions bot mentioned this pull request Dec 15, 2022

Bump helm chart version reference to 0.43.5 #20526

Closed

octavia-squidington-iii mentioned this pull request Dec 18, 2022

Bump Airbyte version from 0.40.25 to 0.40.26 #20630

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Mysql source: mark unknown column exception as config error #20289

Mysql source: mark unknown column exception as config error #20289

sashaNeshcheret commented Dec 9, 2022

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❌ Sources (31)

❌ Destinations (46)

✅ Other Modules (0)

Actionable Items

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Mysql source: mark unknown column exception as config error #20289

Mysql source: mark unknown column exception as config error #20289

Conversation

sashaNeshcheret commented Dec 9, 2022

What

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🚨 User Impact 🚨

Pre-merge Checklist

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Airbyter

Tests

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Affected Connector Report

❌ Sources (31)

❌ Destinations (46)

✅ Other Modules (0)

Actionable Items

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