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1. PyTextureAnalysis PyTextureAnalysis Public

   PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degree of coherence, and structure tensor of an image. This packa…

   Python 25 7

2. PyOrganoIDNet PyOrganoIDNet Public

   This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at ht…

   Jupyter Notebook 2

3. PyHistology PyHistology Public

   Python package that uses colorspace-based segmentation to analyze histopathology images.

   Python 12 3

4. PySpatialHistologyAnalysis PySpatialHistologyAnalysis Public

   Package using StarDist and Python that performs object detection and spatial analysis on H&E images

   Python 2

5. PyElispotAnalysis PyElispotAnalysis Public

   Detecting spots (IFN-Gamma positive cells) from an Elispot assay image using Deep learning

   Python 1

6. PyBlendPatches PyBlendPatches Public

   Efficiently handles large images by segmenting them into patches, performing instance/semantic segmentation, and then reconstructing the patches into a complete, segmented mask.

   Jupyter Notebook 3