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1. FastDeMe FastDeMe Public

   A fast, easy solution for metagenomic data analysis - Forked from Sander Vermeulens repository, developed during his internship

   Python 7 2

2. cgmlst cgmlst Public

   Fork of mlst of tseemann modified for cgmlst. Not very fast when used with organisms with a large number of allelic variants

   Perl 6 2

3. RFPlasmid RFPlasmid Public

   Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf

   Python 48 7

4. Microbial-Genomics-2022 Microbial-Genomics-2022 Public

   https://aldertzomer.github.io/Microbial-Genomics-2022/ Day 4 and 5 of the Microbial Genomics course 2022

   Python 7 3

5. vibrio_parahaemolyticus_genomoserotyping vibrio_parahaemolyticus_genomoserotyping Public

   Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus

   7 2

6. MolecularEpidemiology_AnalysisWGS MolecularEpidemiology_AnalysisWGS Public

   Forked from aschuerch/MolecularEpidemiology_AnalysisWGS

   Python