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Merge pull request #5 from zmml/master
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minor update
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alipirani88 authored Aug 20, 2018
2 parents 9b4aaa6 + f682d98 commit 2230e89
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -359,7 +359,7 @@ Rscript generate_diagnostics_plots.R

| File | Description |
| --------- | ----------- |
| barplot.pdf | Distribution of filter-pass variant positions (variants observed in all the samples) in each sample. Colors represent the filter criteria that caused them to get filtered out in that particular sample.|
| barplot.pdf | Distribution of filter-pass variant positions (positions that contain a variant in at least one sample) in each sample. Colors represent the filter criteria that caused them to get filtered out in that particular sample.|
| barplot_DP.pdf | Distribution of filter-pass variant positions in each sample. Colors represent the read-depth range that they fall in. |
| temp_Only_filtered_positions_for_closely_matrix_FQ.pdf | Heatmap spanning the reference genome that shows positions that were filtered out due to low FQ values |
| DP_position_analysis.pdf | same information as in barplot_DP.pdf but shown in heatmap format|
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