Bio2RDF-scripts

This Git repository holds all of the RDF converter scripts used to generate Bio2RDF linked data.

Requirements

The majority of these scripts were created so as to run on Linux servers. Depending on the script you wish to run you will need:

The Bio2RDF API should be installed in the root directory of the project tree (i.e sibling to bio2rdf-scripts).

Each script is run independently. See README files inside each script directory.

Licensed under MIT License, see license page for details.

Name		Name	Last commit message	Last commit date
Latest commit History 1,761 Commits
affymetrix		affymetrix
biomodels		biomodels
bioportal		bioportal
chembl		chembl
clinicaltrials		clinicaltrials
common		common
ctd		ctd
dbpedia		dbpedia
dbsnp		dbsnp
drugbank		drugbank
genage		genage
genbank		genbank
gendr		gendr
goa		goa
hgnc		hgnc
homologene		homologene
interpro		interpro
ipi		ipi
iproclass		iproclass
irefindex		irefindex
kegg		kegg
linkedSPLs		linkedSPLs
lsr		lsr
mesh		mesh
mgi		mgi
miriam		miriam
ncbigene		ncbigene
ndc		ndc
omim		omim
orphanet		orphanet
pathwaycommons		pathwaycommons
pdb		pdb
pharmgkb		pharmgkb
pubchem		pubchem
pubmed		pubmed
refseq		refseq
sabiork		sabiork
sgd		sgd
sider		sider
statistics		statistics
taxonomy		taxonomy
toxkb		toxkb
uniprot		uniprot
unists		unists
wormbase		wormbase
.gitignore		.gitignore
MIT-LICENSE.txt		MIT-LICENSE.txt
README.md		README.md
runparser.php		runparser.php