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Update README.md
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milkschen authored Nov 19, 2021
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Expand Up @@ -16,8 +16,8 @@ LevioSAM uses a VCF or a chain file to lift over alignments efficiently.
- Position
- Alignmant flag
- CIGAR string
- MD:Z and NM:i tag
- paired read information
- Paired read information
- MD:Z and NM:i tag (optional)

- Multithreading support

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## Usage (ChainMap)

_We haven't provided docker installations for the software supporting ChainMap (will come soon!). Please visit [the wiki page](https://github.com/alshai/levioSAM/wiki/Lift-over-using-a-chain-map) for more info regarding installation._

LevioSAM can also perform lift-over using a chain file as the lift-over map since v0.5.0. Please visit the [ChainMap Usage Page](https://github.com/alshai/levioSAM/wiki/Lift-over-using-a-chain-map) for detailed instructions.

Quick run:
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