Short Macro to test all possible Autothreshold Methods of Imagej

amarcog · Feb 24, 2023 · 226980c · 226980c
1 parent 7ced96e
commit 226980c
Showing 1 changed file with 21 additions and 0 deletions.
diff --git a/Test_all_Auto-Threshold-Methods.ijm b/Test_all_Auto-Threshold-Methods.ijm
@@ -0,0 +1,21 @@
+// This macro allows the display of all possible segmentations using the
+// different threshold algorithms that are implemented in Fiji-Imagej
+
+filename = getTitle();
+subStringArray = split(filename, ".");
+extension = subStringArray[lengthOf(subStringArray)-1]
+titlewoext = replace(filename, "."+extension, "");
+Auto_methods = newArray("Default", "Huang", "Intermodes", "IsoData", "IJ_IsoData", "Li", "MaxEntropy", "Mean", "MinError", "Minimum","Moments", "Otsu", "Percentile", "RenyiEntropy", "Shanbhag", "Triangle", "Yen");
+
+function apply_Auto() { 
+	run("Duplicate...", titlewoext+"-1."+extension);setAutoThreshold(Auto_methods[i]+" dark");rename(Auto_methods[i]);
+}
+
+for (i = 0; i < lengthOf(Auto_methods); i++) {
+	apply_Auto();
+}
+
+run("Tile");
+
+
+