tumor-train

ML model for determining whether H&E tile image contains tumor tissue

Data

Download data from https://github.com/basveeling/pcam

Or, if using a linux environment:

wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_test_meta.csv
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_test_x.h5.gz
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_test_y.h5.gz
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_train_meta.csv
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_train_x.h5.gz
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_train_y.h5.gz
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_valid_meta.csv
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_valid_x.h5.gz
wget https://zenodo.org/record/2546921/files/camelyonpatch_level_2_split_valid_y.h5.gz

Environment

    conda create --name pcam --file ./env/environment.yml

Usage and Tips