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CATG file --prob-msa on -- all branch lengths are 0.1 #131

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nehlehk opened this issue Dec 17, 2021 · 1 comment
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CATG file --prob-msa on -- all branch lengths are 0.1 #131

nehlehk opened this issue Dec 17, 2021 · 1 comment

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@nehlehk
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nehlehk commented Dec 17, 2021

When I'm using the probabilistic alignment (CATG file), it doesn't care about the probability value for each nucleotide; in all scenarios, the branch lengths are 0.1. Also, it doesn't matter what is the model option (--opt-branches on/off, --blopt: anything), the output tree is the same all the time.
amkozlov added a commit that referenced this issue Dec 27, 2021
@amkozlov
fix regression failure with CATG input (#131)
4c8b796
@amkozlov
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fixed by 4c8b796

@amkozlov amkozlov mentioned this issue Apr 4, 2023
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@dlaehnemann dlaehnemann mentioned this issue Aug 15, 2023
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@amkozlov @nehlehk