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Add SPR round optimization by @togkousa #157

Merged
merged 4 commits into from
Mar 8, 2023
Merged

Add SPR round optimization by @togkousa #157

merged 4 commits into from
Mar 8, 2023

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amkozlov
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@amkozlov amkozlov commented Mar 8, 2023

Usage:
--extra fastclv-on = optimized / incremental CLV updates
--extra fastclv-off = legacy mode / compatible with raxml-ng 1.1 and below (default)

`--extra fastclv-on`  = optimized / incremental CLV updates
`--extra fastclv-off` = unoptimized / full CLV updates
NOTE: both versions above yield different tree search paths - and hence potentially different logLH - compared to the "vanilla" raxml-ng (master branch).
In theory, both versions should give exactly the same logLH. In practice, they currently don't :)
`--extra fastclv-on`  = optimized / incremental CLV updates
`--extra fastclv-off` = legacy mode / compatible with raxml-ng 1.1 and below (default)
@amkozlov amkozlov merged commit aa0f088 into dev Mar 8, 2023
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