adding in correct compile flag for tests only

andersen-lab · Jun 18, 2024 · a72d378 · a72d378
1 parent 9e6b77f
commit a72d378
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/ccpp.yml b/.github/workflows/ccpp.yml
@@ -86,7 +86,7 @@ jobs:
     - name: autoconf
       run: ./autogen.sh
     - name: configure
-      run: ./configure CFLAGS="-Wno-unused-but-set-variable"
+      run: ./configure
     - name: make
       run: make
     - name: make check

diff --git a/tests/Makefile.am b/tests/Makefile.am
@@ -1,6 +1,6 @@
 LIBS = -lhts -lz -lpthread
 
-CXXFLAGS = -g -std=c++11 -Wall -Wextra -Werror
+CXXFLAGS = -g -std=c++11 -Wall -Wextra -Werror -Wno-unused-variable 
 
 TESTS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants
 check_PROGRAMS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants