Image pre-processing #487
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Hello, is the lab currently using the MIBI_GUI to assist with image pre-processing (e.g., background removal, denoising, and aggregate removal) or a different method? |
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We're currently using the AMP package for preprocessing: https://github.com/angelolab/amp. However, we're working on a new solution that we should have available sometime early in the new year that requires much less manual fine tuning. |
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The new preprocessing pipeline is now live at www.github.com/angelolab/toffy |
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The new preprocessing pipeline is now live at www.github.com/angelolab/toffy