Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Make row sum normalization optional for pixel-level Pixie preprocessing #1140

Draft
wants to merge 3 commits into
base: main
Choose a base branch
from

Conversation

alex-l-kong
Copy link
Contributor

What is the purpose of this PR?

@kxleow would like to verify if turning off row sum normalization will help with running a MALDI slide through Pixie.

How did you implement your changes

Add a flag rowsum_norm that defaults to True but can be set to False in the notebook.

Remaining issues

This feature will not be merged if the results end up looking worse.

@alex-l-kong alex-l-kong self-assigned this May 23, 2024
@alex-l-kong alex-l-kong marked this pull request as draft May 23, 2024 21:46
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant