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Split spatial analysis module #938
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alex-l-kong
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Feb 28, 2023
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LGTM
srivarra
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Feb 28, 2023
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Looks good!
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What is the purpose of this PR?
Addresses part of #901. Splits the relatively large spatial_analysis.py between the kmeans neighborhood analysis and spatial enrichment code. Will make finding and checking the spatial enrichment easier in the future as well.
How did you implement your changes
New files:
Also adds in missing `cell_type_col' for mixing score functions in the notebook.
Remaining issues
If we decide to unquarantine the spatial enrichment notebook, we'll need to update the imports.