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Prevent duplicate renamed metaclusters in Pixie remapping #993

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merged 13 commits into from
Jun 6, 2023
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alex-l-kong
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What is the purpose of this PR?

Closes #972. Duplicate metacluster renamed values causes issues with grouping in later steps, so this should not be allowed.

How did you implement your changes

Verify that the provided renamed metacluster has not already been taken. If it has, then terminate the renaming process. This will cause that particular metacluster name to be truncated for the time being and is noted in the documentation.

@alex-l-kong alex-l-kong self-assigned this May 16, 2023
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@alex-l-kong alex-l-kong marked this pull request as draft May 16, 2023 00:45
@alex-l-kong alex-l-kong marked this pull request as ready for review May 25, 2023 21:01
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@srivarra srivarra left a comment

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Looks good, just a question and a refactoring suggestion.

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src/ark/phenotyping/pixel_meta_clustering.py Outdated Show resolved Hide resolved
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Nice. Nothing more to add onto @srivarra's comments.

@alex-l-kong alex-l-kong requested a review from srivarra May 30, 2023 22:59
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Looks good!

@alex-l-kong alex-l-kong requested a review from cliu72 May 30, 2023 23:11
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@cliu72 cliu72 left a comment

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Looks good to me. Just a tinnyyy notebook wording change.

@alex-l-kong alex-l-kong requested a review from cliu72 June 3, 2023 02:54
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Looks good!

@alex-l-kong alex-l-kong added this pull request to the merge queue Jun 6, 2023
Merged via the queue into main with commit e663b04 Jun 6, 2023
@alex-l-kong alex-l-kong deleted the meta_dup branch June 6, 2023 18:14
@srivarra srivarra added the bug Something isn't working label Jun 6, 2023
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