Vitessce Configs and Data Conversion for the TONIC Publication.
src/
contains the package which to convert the data from.csv
, and.tiff
intoAnnData
.zarr
andOME-ZARR
ome.zarr
filesghpages-site
contains the source for the GitHub Pages website.- The site uses Astro JS for the build system, and TypeScript + React for the functionality.
- You can find the Vitessce Config for the TONIC data here
You need to have Python 3.10 or newer installed on your system. If you don't have
Python installed, we recommend installing Mambaforge or Rye if you prefer to use a .venv
.
- Install the latest development version by cloning the repo
git clone https://github.com/angelolab/tonic-vitessce.git
pip install tonic-vitessce/tonic-vitessce
See the changelog.
If you found a bug, please use the issue tracker.
t.b.a