GitHub - antosalerno/ISS_AD_BDSlab: Final notebooks used to run an In Situ Sequencing analysis pipeline for data coming from two different technologies: Stereo-seq (S) and Cartana (C). Both cell segmentation and segmentation-free methods were attempted.

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Final notebooks used to run an In Situ Sequencing analysis pipeline for data coming from two different technologies: Stereo-seq (S) and Cartana (C). Both cell segmentation and segmentation-free methods were attempted.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
1C_CellSegmentation_StarDist.ipynb		1C_CellSegmentation_StarDist.ipynb
2C_CARTANA_celltyping.ipynb		2C_CARTANA_celltyping.ipynb
4S_Stereoseq_SSAM.ipynb		4S_Stereoseq_SSAM.ipynb
5S_Stereoseq_spage2vec_embeddings.ipynb		5S_Stereoseq_spage2vec_embeddings.ipynb