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[GOBBLIN-1931] Refactor dag action updating method & add clarifying comment #3801

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merged 4 commits into from
Oct 20, 2023

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@umustafi umustafi commented Oct 18, 2023

Dear Gobblin maintainers,

Please accept this PR. I understand that it will not be reviewed until I have checked off all the steps below!

JIRA

Description

  • Here are some details about my PR, including screenshots (if applicable):

  • Small refactor to improve coding style of updateFlowExecutionId method of DagAction. Add an additional clarifying comment to ensure the right DagActions are used.

  • Log when we filter out duplicates to ensure events are not wrongfully skipped

Tests

  • My PR adds the following unit tests OR does not need testing for this extremely good reason:

Commits

  • My commits all reference JIRA issues in their subject lines, and I have squashed multiple commits if they address the same issue. In addition, my commits follow the guidelines from "How to write a good git commit message":
    1. Subject is separated from body by a blank line
    2. Subject is limited to 50 characters
    3. Subject does not end with a period
    4. Subject uses the imperative mood ("add", not "adding")
    5. Body wraps at 72 characters
    6. Body explains "what" and "why", not "how"

@@ -216,7 +217,7 @@ protected void submitFlowToDagManagerHelper(String flowGroup, String flowName) {

@Override
protected void createMetrics() {
super.createMetrics();
super.messagesRead = this.getMetricContext().counter(ServiceMetricNames.GOBBLIN_SERVICE_PREFIX + RuntimeMetrics.GOBBLIN_KAFKA_HIGH_LEVEL_CONSUMER_MESSAGES_READ);
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If we're calling it here is there any different creating a counter vs a contextawarecounter?

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the super type is counter, so could not change to contextAwareCounter unfortunately.

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codecov-commenter commented Oct 20, 2023

Codecov Report

Merging #3801 (ec67462) into master (eeb5142) will increase coverage by 0.03%.
Report is 3 commits behind head on master.
The diff coverage is 50.00%.

@@             Coverage Diff              @@
##             master    #3801      +/-   ##
============================================
+ Coverage     47.33%   47.36%   +0.03%     
- Complexity    10973    10996      +23     
============================================
  Files          2152     2155       +3     
  Lines         85176    85228      +52     
  Branches       9472     9478       +6     
============================================
+ Hits          40317    40369      +52     
- Misses        41200    41202       +2     
+ Partials       3659     3657       -2     
Files Coverage Δ
...org/apache/gobblin/runtime/api/DagActionStore.java 86.66% <100.00%> (ø)
...blin/runtime/api/MysqlMultiActiveLeaseArbiter.java 75.29% <100.00%> (ø)
...pache/gobblin/runtime/kafka/HighLevelConsumer.java 0.00% <0.00%> (ø)
...gobblin/service/monitoring/ChangeMonitorUtils.java 0.00% <0.00%> (ø)
...ervice/monitoring/DagActionStoreChangeMonitor.java 0.00% <0.00%> (ø)
...vice/modules/orchestration/FlowTriggerHandler.java 22.11% <0.00%> (+0.21%) ⬆️

... and 18 files with indirect coverage changes

📣 We’re building smart automated test selection to slash your CI/CD build times. Learn more

@Will-Lo Will-Lo merged commit 2e3102f into apache:master Oct 20, 2023
6 checks passed
phet pushed a commit to phet/gobblin that referenced this pull request Oct 26, 2023
…omment (apache#3801)

* Refactor dag action updating method & add clarifying comment

* Log filtered out duplicate messages

* logs and metrics for missing messages from change monitor

* Only add gobblin.service prefix for dagActionStoreChangeMonitor

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>
Will-Lo added a commit to Will-Lo/incubator-gobblin that referenced this pull request Dec 20, 2023
* [GOBBLIN-1921] Properly handle reminder events (apache#3790)

* Add millisecond level precision to timestamp cols & proper timezone conversion

	- existing tests pass with minor modifications

* Handle reminder events properly

* Fix compilation errors & add isReminder flag

* Add unit tests

* Address review comments

* Add newline to address comment

* Include reminder/original tag in logging

* Clarify timezone issues in comment

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1924] Reminder event flag true (apache#3795)

* Set reminder event flag to true for reminders

* Update unit tests

* remove unused variable

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1923] Add retention for lease arbiter table (apache#3792)

* Add retention for lease arbiter table

* Replace blocking thread with scheduled thread pool executor

* Make Calendar instance thread-safe

* Rename variables, make values more clear

* Update timestamp related cols

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* Change debug statements to info temporarily to debug (apache#3796)

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1926] Fix Reminder Event Epsilon Comparison (apache#3797)

* Fix Reminder Event Epsilon Comparison

* Add TODO comment

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1930] Improve Multi-active related logs and metrics (apache#3800)

* Improve Multi-active related logs and metrics

* Add more metrics and logs around forwarding dag action to DagManager

* Improve logs in response to review comments

* Replace flow execution id with trigger timestamp from multi-active

* Update flow action execution id within lease arbiter

* Fix test & make Lease Statuses more lean

* Update javadoc

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* add dataset root in some common type of datasets

* [GOBBLIN-1927] Add topic validation support in KafkaSource, and add TopicNameValidator (apache#3793)

* * Add generic topic validation support
* Add the first validator TopicNameValidator into the validator chain, as a refactor of existing codes

* Refine to address comments

* Refine

---------

Co-authored-by: Tao Qin <tqin@linkedin.com>

* [GOBBLIN-1931] Refactor dag action updating method & add clarifying comment (apache#3801)

* Refactor dag action updating method & add clarifying comment

* Log filtered out duplicate messages

* logs and metrics for missing messages from change monitor

* Only add gobblin.service prefix for dagActionStoreChangeMonitor

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1934] Monitor High Level Consumer queue size (apache#3805)

* Emit metrics to monitor high level consumer queue size

* Empty commit to trigger tests

* Use BlockingQueue.size() func instead of atomic integer array

* Remove unused import & add DagActionChangeMonitor prefix to metric

* Refactor to avoid repeating code

* Make protected variables private where possible

* Fix white space

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1935] Skip null dag action types unable to be processed (apache#3807)

* Skip over null dag actions from malformed messages

* Add new metric for skipped messages

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1922]Add function in Kafka Source to recompute workUnits for filtered partitions (apache#3798)

* add function in Kafka Source to recompute workUnits for filtered partitions

* address comments

* set default min container value to 1

* add condition when create empty wu

* update the condition

* Expose functions to fetch record partitionColumn value (apache#3810)

* [GOBBLIN-1938] preserve x bit in manifest file based copy (apache#3804)

* preserve x bit in manifest file based copy
* fix project structure preventing running unit tests from intellij
* fix unit test

* [GOBBLIN-1919] Simplify a few elements of MR-related job exec before reusing code in Temporal-based execution (apache#3784)

* Simplify a few elements of MR-related job exec before reusing code in Temporal-based execution

* Add JSON-ification to several foundational config-state representations, plus encapsulated convience method `JobState.getJobIdFromProps`

* Update javadoc comments

* Encapsulate check for whether a path has the extension of a multi-work-unit

* [GOBBLIN-1939] Bump AWS version to use a compatible version of Jackson with Gobblin (apache#3809)

* Bump AWS version to use a compatible version of jackson with Gobblin

* use shared aws version

* [GOBBLIN-1937] Quantify Missed Work Completed by Reminders (apache#3808)

* Quantify Missed Work Completed by Reminders
   Also fix bug to filter out heartbeat events before extracting field

* Refactor changeMonitorUtils & add delimiter to metrics prefix

* Re-order params to group similar ones

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* GOBBLIN-1933]Change the logic in completeness verifier to support multi reference tier (apache#3806)

* address comments

* use connectionmanager when httpclient is not cloesable

* [GOBBLIN-1933] Change the logic in completeness verifier to support multi reference tier

* add uite test

* fix typo

* change the javadoc

* change the javadoc

---------

Co-authored-by: Zihan Li <zihli@zihli-mn2.linkedin.biz>

* [GOBBLIN-1943] Use AWS version 1.12.261 to fix a security vulnerability in the previous version (apache#3813)

* [GOBBLIN-1941] Develop Temporal abstractions, including `Workload` for workflows of unbounded size through sub-workflow nesting (apache#3811)

* Define `Workload` abstraction for Temporal workflows of unbounded size through sub-workflow nesting

* Adjust Gobblin-Temporal configurability for consistency and abstraction

* Define `WorkerConfig`, to pass the `TemporalWorker`'s configuration to the workflows and activities it hosts

* Improve javadoc

* Javadoc fixup

* Minor changes

* Update per review suggestions

* Insert pause, to spread the load on the temporal server, before launch of each child workflow that may have direct leaves of its own

* Appease findbugs by having `SeqSliceBackedWorkSpan::next` throw `NoSuchElementException`

* Add comment

* [GOBBLIN-1944] Add gobblin-temporal load generator for a single subsuming super-workflow with a configurable number of activities nested beneath (apache#3815)

* Add gobblin-temporal load generator for a single subsuming super-workflow with a configurable number of activities nested beneath

* Update per findbugs advice

* Improve processing of int props

* [GOBBLIN-1945] Implement Distributed Data Movement (DDM) Gobblin-on-Temporal `WorkUnit` evaluation (apache#3816)

* Implement Distributed Data Movement (DDM) Gobblin-on-Temporal `WorkUnit` evaluation

* Adjust work unit processing tuning for start-to-close timeout and nested execution branching

* Rework `ProcessWorkUnitImpl` and fix `FileSystem` misuse; plus convenience abstractions to load `FileSystem`, `JobState`, and `StateStore<TaskState>`

* Fix `FileSystem` resource lifecycle, uniquely name each workflow, and drastically reduce worker concurrent task execution

* Heed findbugs advice

* prep before commit

* Improve processing of required props

* Update comment in response to PR feedback

* [GOBBLIN-1942] Create MySQL util class for re-usable methods and setup MysqlDagActio… (apache#3812)

* Create MySQL util class for re-usable methods and setup MysqlDagActionStore retention

* Add a java doc

* Address review comments

* Close scheduled executors on shutdown & clarify naming and comments

* Remove extra period making config key invalid

* implement Closeable

* Use try with resources

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [Hotfix][GOBBLIN-1949] add option to detect malformed orc during commit (apache#3818)

* add option to detect malformed ORC during commit phase

* better logging

* address comment

* catch more generic exception

* validate ORC file after close

* move validate in between close and commit

* syntax

* whitespace

* update log

* [GOBBLIN-1948] Use same flowExecutionId across participants (apache#3819)

* Use same flowExecutionId across participants
* Set config field as well in new FlowSpec
* Use gobblin util to create config
* Rename function and move to util
---------
Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* Allow extension of functions in GobblinMCEPublisher and customization of fileList file metrics are calculated for (apache#3820)

* [GOBBLIN-1951] Emit GTE when deleting corrupted ORC files (apache#3821)

* [GOBBLIN-1951] Emit GTE when deleting corrupted ORC files

This commit adds ORC file validation during the commit phase and deletes
corrupted files. It also includes a test for ORC file validation.

* Linter fixes

* Add framework and unit tests for DagActionStoreChangeMonitor (apache#3817)

* Add framework and unit tests for DagActionStoreChangeMonitor

* Add more test cases and validation

* Add header for new file

* Move FlowSpec static function to Utils class

* Remove unused import

* Fix compile error

* Fix unit tests

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1952] Make jobname shortening in GaaS more aggressive (apache#3822)

* Make jobname shortening in GaaS more aggressive

* Change long name prefix to flowgroup

* Make KafkaTopicGroupingWorkUnitPacker pack with desired num of container (apache#3814)

* Make KafkaTopicGroupingWorkUnitPacker pack with desired num of container

* update comment

* [GOBBLIN-1953] Add an exception message to orc writer validation GTE (apache#3826)

* Fix FlowSpec Updating Function (apache#3823)

* Fix FlowSpec Updating Function
   * makes Config object with FlowSpec mutable
   * adds unit test to ensure flow compiles after updating FlowSpec
   * ensure DagManager resilient to exceptions on leadership change

* Only update Properties obj not Config to avoid GC overhead

* Address findbugs error

* Avoid updating or creating new FlowSpec objects by passing flowExecutionId directly to metadata

* Remove changes that are not needed anymore

* Add TODO to handle failed DagManager leadership change

* Overload function and add more documentation

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* Emit metric to tune LeaseArbiter Linger metric  (apache#3824)

* Monitor number of failed persisting leases to tune linger

* Increase default linger and epsilon values

* Add metric for lease persisting success

* Rename metrics

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1956]Make Kafka streaming pipeline be able to config the max poll records during runtime (apache#3827)

* address comments

* use connectionmanager when httpclient is not cloesable

* add uite test

* fix typo

* [GOBBLIN-1956] Make Kafka streaming pipeline be able to config the max poll records during runtime

* small refractor

---------

Co-authored-by: Zihan Li <zihli@zihli-mn2.linkedin.biz>

* Add semantics for failure on partial success (apache#3831)

* Consistly handle Rest.li /flowexecutions KILL and RESUME actions (apache#3830)

* [GOBBLIN-1957] GobblinOrcwriter improvements for large records (apache#3828)

* WIP

* Optimization to limit batchsize based on large record sizes

* Address review

* Use DB-qualified table ID as `IcebergTable` dataset descriptor (apache#3834)

* [GOBBLIN-1961] Allow `IcebergDatasetFinder` to use separate names for source vs. destination-side DB and table (apache#3835)

* Allow `IcebergDatasetFinder` to use separate names for source vs. destination-side DB and table

* Adjust Mockito.verify to pass test

* Prevent NPE in `FlowCompilationValidationHelper.validateAndHandleConcurrentExecution` (apache#3836)

* Prevent NPE in `FlowCompilationValidationHelper.validateAndHandleConcurrentExecution`

* improved `MultiHopFlowCompiler` javadoc

* Delete Launch Action Events After Processing (apache#3837)

* Delete launch action event after persisting

* Fix default value for flowExecutionId retrieval from metadata map

* Address review comments and add unit test

* Code clean up

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1960] Emit audit count after commit in IcebergMetadataWriter (apache#3833)

* Emit audit count after commit in IcebergMetadataWriter

* Unit tests by extracting to a post commit

* Emit audit count first

* find bugs complaint

* [GOBBLIN-1967] Add external data node for generic ingress/egress on GaaS (apache#3838)

* Add external data node for generic ingress/egress on GaaS

* Address reviews and cleanup

* Use URI representation for external dataset descriptor node

* Fix error message in containing check

* Address review

* [GOBBLIN-1971] Allow `IcebergCatalog` to specify the `DatasetDescriptor` name for the `IcebergTable`s it creates (apache#3842)

* Allow `IcebergCatalog` to specify the `DatasetDescriptor` name for the `IcebergTable`s it creates

* small method javadoc

* [GOBBLIN-1970] Consolidate processing dag actions to one code path (apache#3841)

* Consolidate processing dag actions to one code path

* Delete dag action in failure cases too

* Distinguish metrics for startup

* Refactor to avoid duplicated code and create static metrics proxy class

* Remove DagManager checks that don't apply on startup

* Add test to check kill/resume dag action removal after processing

* Remove unused import

* Initialize metrics proxy with Null Pattern

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1972] Fix `CopyDataPublisher` to avoid committing post-publish WUs before they've actually run (apache#3844)

* Fix `CopyDataPublisher` to avoid committing post-publish WUs before they've actually run

* fixup findbugsMain

* [GOBBLIN-1975] Keep job.name configuration immutable if specified on GaaS (apache#3847)

* Revert "[GOBBLIN-1952] Make jobname shortening in GaaS more aggressive (apache#3822)"

This reverts commit 5619a0a.

* use configuration to keep specified jobname if enabled

* Cleanup

* [GOBBLIN-1974] Ensure Adhoc Flows can be Executed in Multi-active Scheduler state (apache#3846)

* Ensure Adhoc Flows can be Executed in Multi-active Scheduler state

* Only delete spec for adhoc flows & always after orchestration

* Delete adhoc flows when dagManager is not present as well

* Fix flaky test for scheduler

* Add clarifying comment about failure recovery

* Re-ordered private method

* Move private methods again

* Enforce sequential ordering of unit tests to make more reliable

---------

Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>

* [GOBBLIN-1973] Change Manifest distcp logic to compare permissions of source and dest files even when source is older (apache#3845)

* change should copy logic

* Add tests, address review

* Fix checkstyle

* Remove unused imports

* [GOBBLIN-1976] Allow an `IcebergCatalog` to override the `DatasetDescriptor` platform name for the `IcebergTable`s it creates (apache#3848)

* Allow an `IcebergCatalog` to override the `DatasetDescriptor` platform for the `IcebergTable`s it creates

* fixup javadoc

* Log when `PasswordManager` fails to load any master password (apache#3849)

* [GOBBLIN-1968] Temporal commit step integration (apache#3829)

Add commit step to Gobblin temporal workflow for job publish

* Add codeql analysis

* Make gradle specific

* Add codeql as part of build script

* Initialize codeql

* Use separate workflow for codeql instead with custom build function as autobuild seems to not work

* Add jdk jar for global dependencies script

---------

Co-authored-by: umustafi <umust77@gmail.com>
Co-authored-by: Urmi Mustafi <umustafi@linkedin.com>
Co-authored-by: Arjun <abora@linkedin.com>
Co-authored-by: Tao Qin <35046097+wsarecv@users.noreply.github.com>
Co-authored-by: Tao Qin <tqin@linkedin.com>
Co-authored-by: Hanghang Nate Liu <nate.hanghang.liu@gmail.com>
Co-authored-by: Andy Jiang <andy.jiang99@outlook.com>
Co-authored-by: Kip Kohn <ckohn@linkedin.com>
Co-authored-by: Zihan Li <zihli@linkedin.com>
Co-authored-by: Zihan Li <zihli@zihli-mn2.linkedin.biz>
Co-authored-by: Matthew Ho <mho@linkedin.com>
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4 participants