Support WAL Compression #12476

THUMarkLau · 2024-05-07T08:11:42Z

The write-ahead logging consumes a significant amount of I/O resources during data writing, sometimes even 2-7 times the amount of TsFile I/O. Currently, the write-ahead logging in the system is uncompressed, this is a main reason for the large volume of WAL. Therefore, compressing the write-ahead logging can save I/O resources and enhance system performance. This PR primarily introduces support for compressing write-ahead logging, featuring the following characteristics:

The basic unit for compression and decompression is a WAL Buffer, which may contain several WAL Entries, with a default size of 16MB. This design achieves a good compression ratio while minimizing modifications to upper-layer applications.
To maintain compatibility with previous versions, we have replaced the original Magic String in the WAL file with a Version String to distinguish between different versions of WAL. If there are subsequent new versions of WAL, we can continue to add new Version Strings.
Multiple compression methods are supported. Currently, the choice of compression method is not open to users, but theoretically, our design supports various compression methods, and we may open this option in the future.

Changes in system resource consumption and system performance caused by this feature will be supplemented in subsequent comments.

codecov · 2024-05-25T12:28:53Z

Codecov Report

Attention: Patch coverage is 82.53968% with 55 lines in your changes missing coverage. Please review.

Project coverage is 41.80%. Comparing base (89af73d) to head (d0b76f3).

Files	Patch %	Lines
...torageengine/dataregion/wal/io/WALInputStream.java	79.59%	40 Missing ⚠️
...eengine/dataregion/wal/utils/WALEntryPosition.java	50.00%	7 Missing ⚠️
...java/org/apache/iotdb/db/conf/IoTDBDescriptor.java	50.00%	4 Missing ⚠️
...wal/allocation/AbstractNodeAllocationStrategy.java	0.00%	3 Missing ⚠️
...b/storageengine/dataregion/wal/io/WALMetaData.java	88.88%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff              @@
##             master   #12476      +/-   ##
============================================
+ Coverage     41.75%   41.80%   +0.04%     
  Complexity       71       71              
============================================
  Files          3293     3294       +1     
  Lines        207571   207852     +281     
  Branches      24664    24708      +44     
============================================
+ Hits          86673    86888     +215     
- Misses       120898   120964      +66

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Caideyipi · 2024-05-28T15:16:25Z

...re/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/LogWriter.java

@@ -79,6 +132,10 @@ public long size() {
    return size;
  }

+  public long oiginalSize() {


May be replaced with originalSize

Caideyipi · 2024-05-28T15:31:47Z

iotdb-core/datanode/src/main/java/org/apache/iotdb/db/conf/IoTDBConfig.java

@@ -221,7 +222,7 @@ public class IoTDBConfig {
  private int walBufferQueueCapacity = 500;

  /** Size threshold of each wal file. Unit: byte */
-  private volatile long walFileSizeThresholdInByte = 30 * 1024 * 1024L;
+  private volatile long walFileSizeThresholdInByte = 30 * 1024L * 1024L;


Why change this here?

Caideyipi · 2024-05-28T15:32:16Z

iotdb-core/node-commons/src/assembly/resources/conf/iotdb-common.properties

@@ -763,6 +763,10 @@ data_replication_factor=1
 # Datatype: long
 # iot_consensus_cache_window_time_in_ms=-1

+# WAL compression algorithm
+# options: UNCOMPRESSED, SNAPPY, LZ4, GZIP, ZSTD
+# wal_compress_algorithm=UNCOMPRESSED


May tune to decide the default algorithm.

Change the configuration item to enable or disable wal compression by true or false.

jt2594838

There are issues that should be solved. Also, please add new tests.

.../apache/iotdb/db/storageengine/dataregion/wal/allocation/AbstractNodeAllocationStrategy.java

...atanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/buffer/WALBuffer.java

...main/java/org/apache/iotdb/db/storageengine/dataregion/wal/checkpoint/CheckpointManager.java

.../datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/WALMetaData.java

...e/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/utils/WALEntryPosition.java

...st/java/org/apache/iotdb/db/storageengine/dataregion/wal/compression/WALCompressionTest.java

...tanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/WALInputStream.java

.../apache/iotdb/db/storageengine/dataregion/wal/allocation/AbstractNodeAllocationStrategy.java

OneSizeFitsQuorum · 2024-06-11T04:02:30Z

iotdb-core/node-commons/src/assembly/resources/conf/iotdb-system.properties

@@ -1215,6 +1215,10 @@ data_replication_factor=1
 # Datatype: long
 # iot_consensus_cache_window_time_in_ms=-1

+# Enable Write Ahead Log compression.
+# Option: true, false
+# enable_wal_compression=false


enable hot reload?

jt2594838

Good, please see to the remaining minor issues.

...tanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/WALInputStream.java

...st/java/org/apache/iotdb/db/storageengine/dataregion/wal/compression/WALCompressionTest.java

remove metrics in mem table flush task, cache hash code in partial path, use gzip to compress wal batch update metrics

…shold

sonarcloud · 2024-06-17T07:29:12Z

Quality Gate failed

Failed conditions
0.0% Coverage on New Code (required ≥ 80%)

See analysis details on SonarCloud

* [IOTDB-6336] Add max retry time duration and whether to retry for unknown errors configurations * Optimize error message when creating unsupported data type (#12650) Optimize error message when creating unsupported data type * Pipe: fix uninitialized config when validate PipeHistoricalDataRegionTsFileExtractor parameters & Subscription: avoid poll messages from unsubscribed topics (#12648) * Pipe: fix uninitialized config when validate PipeHistoricalDataRegionTsFileExtractor parameters * Subscription: avoid poll messages from unsubscribed topics * Fix region migration's timeout judgement #12639 * fix compaction recover skip negative time partition (#12637) * Fix Concurrency Instability When IoTConsensus LogDispatcher Exits #12655 * JDBC: Fix IndexOutOfBoundsException when calling getBytes (#12662) * JDBC: Fix ArrayOutOfBoundException when calling getBytes * Update JDBCCharsetExample.java * [IOTDB-6335] Redundant rows when using GROUP BY TIME with LIMIT * Pipe: Enhance error handling logic in pipe async connector's handlers (#12669) * Print log when read resource error (#12666) * Load: Make load SQL option VERIFY can only be set to true (#12670) * Pipe: Improved hybrid algorithm and avoid the caculations of tsfiles in connector pending queue tsfiles to block the forwarding of realtime requests (#12668) * Migrate to Develocity Maven Extension (#12658) * Migrate to Develocity Maven Extension * Update to Common Custom User Data Maven Extension 2.0 * Update import schema logic implementation and optimize -help display information (#12643) * add import-schema.sh/bat and export-schema.sh/bat in cli/tools * fix import schema * fix import schema --------- Co-authored-by: 2b3c511 <rong.li@timecho.com> * Subscription: fix topic now timestamp precision (#12663) * [IOTDB-6337] Refine the count calculation in RegionScan framework * Bump version of master branch to 1.3.3-SNAPSHOT (#12672) * Pipe: Reduce warn log when PipeConfigRegionExtractorMetrics does not exist (#12673) * [IOTDB-6061] Fix the instability failure caused by initServer in IoTConsensus UT not binding to the corresponding port (#12674) * fix concurrent * fix concurrent * Load: Make load SQL option VERIFY can only be set to true (A follow-up fix for #12670) (#12676) * Pipe: add compression level config for connector ZSTD compressor (#12630) Co-authored-by: Steve Yurong Su <rong@apache.org> * [PY-client] Unify setup.py and requirement.txt (#12601) * Pipe IT: Ignore failed cases caused by cluster restart failure (#12678) * update import and export data -help description (#12677) Co-authored-by: 2b3c511 <rong.li@timecho.com> * Pipe: Fix potential NPE when lastEvent == null in PipeConnectorSubtask (#12680) * Fix wrong calculation for maxBytesCanReserve for IdentitySinkOperator * Change floating point encoding method in IT * Throw `IndexOutOfBound` exception in row implementation. * Thread safely SeriesPartitionTable (#12679) * finish * use concurrentskiplist * bug fix --------- Co-authored-by: OneSizeFitQuorum <tanxinyu@apache.org> * Pipe: Refactor some features for user access (#12686) * Set timestamp precision same as time column (#12681) * done * done * rollback change * fix IT * fix IT * Set configuration on node (#12626) Co-authored-by: Haonan <hhaonan@outlook.com> * Fix cli report error when ignoreTimestamp is true (#12691) * done * done * rollback change * fix IT * fix IT * done * invoke ci * done * invoke ci * Load: Add check for BufferUnderflowException (#12690) Co-authored-by: xz m <xiangzhi.meng@timecho.com> * remove excess stack * Fix new UDTF execution framework dead loop error. * Perfect methods of IAnalysis to adapt the write process of table model * Load: Support storing piecenode in multiple folders during 2nd phase (#12675) Co-authored-by: Steve Yurong Su <rong@apache.org> * Pipe: add decompressed length in RPC compression payload to avoid potential OOM on receiver (#12701) * Load: Update loadTsFileDirs after all newLoadTsFileDirs are generated to avoid undefined behavior (#12712) * Pipe: Fixed NPE in schema pattern parsing & Improved connector subtask retry logic and logs & Fixed the executor used by consensus pipe (#12704) * Procedure: Fix ProcedureInfo on CN leader may decrease its procId (#12711) * Fix missing of linux memory metrics (#12713) * fix missing memory metric * remove the print of type * update import and export tsfile description (#12684) Co-authored-by: 2b3c511 <rong.li@timecho.com> * Subscription: skip on setup and cluster failure when running subscription restart IT & fix some bugs in SubscriptionExecutorServiceManager (#12710) * Update pom.xml to fix security issue (#12705) Co-authored-by: Christofer Dutz <cdutz@apache.org> * Rename IoTV2Consensus to IoTConsensusV2 (#12715) Signed-off-by: OneSizeFitQuorum <tanxinyu@apache.org> * Fix NumberFormatException when upgrade from old version #12719 * Replenish effective mode in iotdb-system.properties (#12706) * load-tsfile script: disable redirection & load: handle exceptions using the Analysis objects instead of throwing exceptions & pipe: handle SYSTEM_READ_ONLY correctly on receiver side (#12716) * Subscription: improve parsing logic when using JAVA SDK client & refactor subscription IT & intro `getSubscribedTopicNames` API (#12721) * Pipe: Fix schema events can not report & Fix delete data events in data regions may fail to mark at schema metrics (#12722) * Pipe: Support `"source.history.loose-range" = "path"` in iotdb-source (#12651) Co-authored-by: Steve Yurong Su <rong@apache.org> * [IOTDB-6338] Fix wrong query result while using some value filter with LIMIT/OFFSET * Pipe: fix threads of IoTDB-Pipe-Processor-Executor-Pool stucked by PipeTsFileInsertionEvent#waitForTsFileClose (#12727) * [ISSUE 12499] Reject query with massive time span in limited memroy * Fix/include thrift lib and headers in cpp client (#12734) * fix: Hopefully fixed the build of the cpp-example on windows systems * fix: Increase the timeout even more to finally make the build succeed. * fix: Fix the build. * chore: Fixed the assembly descriptor of the cpp-client to include the thrift libs and header files. * Pipe / Load / Subscription: Support new TsDataTypes (STRING / BLOB / TIMESTAMP / DATE) (#12665) * Optimize the log printing when multiple error occur (#12732) * Update packege hierachy in Client-cpp readme (#12736) * Support agg(*) query in templated align by device situation * fix config node use IoTDBDescriptor (#12730) * PipeConsensus: Delete WAL after dropping database & fix receiver directory recovery (#12738) * fix wal deletion & create receiver dir * update consensus protocol class * merge judge * modify directory path * modify directory path * Add instructions of compiling client-cpp with VS2019. (#12739) * Subscription: adapt pipe completion signal for automatically drop subscription (#12724) * Verify connection && Refactor async connection framework (#12667) * PipeConsensus: add metrics and fix some bugs for pipeConsensus (#12723) * Decrease TTL Deletion in compaction modification cache (#12687) * decrease TTL Deletion in compaction modification cache * Update iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/utils/MultiTsFileDeviceIterator.java Co-authored-by: Jiang Tian <jt2594838@163.com> * modify MultiTsFileDeviceIterator * fix spotless --------- Co-authored-by: Jiang Tian <jt2594838@163.com> * Stabilize verify connection IT (#12745) * done * more ! * Fix compaction npe when set modified status (#12729) * fix compaction npe when set modified status * check empty page * Subscription IT: execute jstack for potential stuck test cases (#12728) * Pipe: Smoothed the rate in pipe's remaining time calculations (#12699) * Pipe: Fix PipeDataRegionEventCounter not work in PipeRealtimeDataRegionExtractor (#12747) * Fix python CI (#12754) * Support show device ttl on path pattern (#12709) * support show ttl on pathPattern * fix UT * modify details * Support WAL Compression (#12476) * enable wal compression remove metrics in mem table flush task, cache hash code in partial path, use gzip to compress wal batch update metrics * fix bug * fix compilation problem * remove useless code * recover some code * support compression type in WAL Compress Header * support multi version WAL * edit configuration item * add log for WAL size * temp for debug * fix bug * remove useless log * remove one configuration * use compression rate to update wal disk usage * fix ut * fix test * set default to uncompress * fix wal ut * optimize calculating of wal size * close wal file when the origin size of wal buffer is larger than threshold * add the size of magic string * may be fix the bug * fix with comment * edit with review * fix test * add test for wal compression * add hot reload * clean the code to make it more readable * reuse the byte buffer if possible * Indicate the encoding of String * Edit according to comment * spotless * Optimize the devicePath generation efficiency of PlanNode when deserializing (#12749) * Pipe: Support "source.realtime.loose-range" = "path" in iotdb-source (#12751) * Support active schema query (#12718) * Check duplicate in start-node and stop-node scripts (#12756) * check duplicate key in start node script * modify stop node scripts * use \n as line separator * fix config node send showConfiguration to config node classCastException * [IOTDB-6339] Optimize the time slice control of SeriesScanOperator and AlignedSeriesScanOperator * Optimize node startup process & Normalize system.properties management (#12752) * [IOTDB-6340] Clear Coordinator.queryExecutionMap while encountering MemoryNotEnough Exception * [IOTDB-6342] Clear FragmentInstanceManager.dataNodeQueryContextMap while encountering MemoryNotEnough Exception (#12762) * Refactor node registration check (#12766) * done * done * Fix overlap between tsfile is not correctly marked (#12748) * file fileOverlap is not correctly marked * fix repair compaction may generate too large chunk * Subscription: support topic loose range for path and time (#12760) * Add clean logic for FragmentInstance in case that callback is not added. (#12768) * SystemPropertiesHandler use Files::move instead of File::renameTo (#12770) * Files.move * ? * ? * ? * Pipe: Filter devices by pattern before reading device metadata from TsFile (#12765) Currently we read the metadata of all devices and measurements when constructing a TsFileInsertionDataContainer. This is both time-consuming and memory-wasting if only a few devices match the pattern. This PR filters the devices by pattern before reading the metadata of devices and measurements, saving memory and I/O cost when there are many unmatched devices. Note: this only works when TsFile metadata are not cached (due to high memory usage of TsFile metadata cache), because cached metadata can not be filtered so that pipes with arbitrary patterns can use it. --------- Co-authored-by: Steve Yurong Su <rong@apache.org> * Pipe: Adjusted some loggers of metrics to avoid unnecessary warns & Include "lastEvent" into pipe's event count metrics & Removed the "userConflict" judgment to data sync failure caused by METADATA_ERROR (#12758) * Synchronize takeSnapshotAsync on RaftGroupID (#12767) * SystemPropertiesHandler close reader and writer #12772 * Pipe Consensus: Fix events in connector are not in order because of parameter `'realtime-first' = 'true'` (#12773) * Pipe: Avoid event being continuously rate-limited even its pipe is dropped (#12753) Co-authored-by: Steve Yurong Su <rong@apache.org> * Load: Add some load metrics of time cost, write point and disk throughput (#12735) Co-authored-by: Steve Yurong Su <rong@apache.org> --------- Signed-off-by: OneSizeFitQuorum <tanxinyu@apache.org> Co-authored-by: Chen YZ <43774645+Cpaulyz@users.noreply.github.com> Co-authored-by: V_Galaxy <vgalaxies@apache.org> Co-authored-by: Li Yu Heng <liyuheng55555@126.com> Co-authored-by: shuwenwei <55970239+shuwenwei@users.noreply.github.com> Co-authored-by: Xiangpeng Hu <65238551+BUAAserein@users.noreply.github.com> Co-authored-by: Steve Yurong Su <rong@apache.org> Co-authored-by: YangCaiyin <ycycse@gmail.com> Co-authored-by: Haonan <hhaonan@outlook.com> Co-authored-by: Caideyipi <87789683+Caideyipi@users.noreply.github.com> Co-authored-by: Clay Johnson <cjohnson@gradle.com> Co-authored-by: Summer <43237967+2b3c511@users.noreply.github.com> Co-authored-by: 2b3c511 <rong.li@timecho.com> Co-authored-by: Zikun Ma <55695098+DanielWang2035@users.noreply.github.com> Co-authored-by: Liao Lanyu <1435078631@qq.com> Co-authored-by: Zhihao Shen <zhihaoshen7@qq.com> Co-authored-by: Yongzao <yongzao@apache.org> Co-authored-by: OneSizeFitQuorum <tanxinyu@apache.org> Co-authored-by: ppppoooo <1214343862@qq.com> Co-authored-by: xz m <xiangzhi.meng@timecho.com> Co-authored-by: CritasWang <critas@outlook.com> Co-authored-by: Beyyes <cgf1993@foxmail.com> Co-authored-by: Itami Sho <42286868+MiniSho@users.noreply.github.com> Co-authored-by: ZhangHongYin <46039728+SpriCoder@users.noreply.github.com> Co-authored-by: Christofer Dutz <cdutz@apache.org> Co-authored-by: liuminghui233 <36565497+liuminghui233@users.noreply.github.com> Co-authored-by: Jiang Tian <jt2594838@163.com> Co-authored-by: yschengzi <87161145+yschengzi@users.noreply.github.com> Co-authored-by: Peng Junzhi <78788603+Pengzna@users.noreply.github.com> Co-authored-by: 周沛辰 <45144903+choubenson@users.noreply.github.com> Co-authored-by: Liu Xuxin <37140360+THUMarkLau@users.noreply.github.com> Co-authored-by: William Song <48054931+SzyWilliam@users.noreply.github.com>

* enable wal compression remove metrics in mem table flush task, cache hash code in partial path, use gzip to compress wal batch update metrics * fix bug * fix compilation problem * remove useless code * recover some code * support compression type in WAL Compress Header * support multi version WAL * edit configuration item * add log for WAL size * temp for debug * fix bug * remove useless log * remove one configuration * use compression rate to update wal disk usage * fix ut * fix test * set default to uncompress * fix wal ut * optimize calculating of wal size * close wal file when the origin size of wal buffer is larger than threshold * add the size of magic string * may be fix the bug * fix with comment * edit with review * fix test * add test for wal compression * add hot reload * clean the code to make it more readable * reuse the byte buffer if possible * Indicate the encoding of String * Edit according to comment * spotless

THUMarkLau force-pushed the wal-compress-formal-branch branch from 834e61d to 70d8400 Compare May 11, 2024 08:24

THUMarkLau force-pushed the wal-compress-formal-branch branch 2 times, most recently from 89b0f35 to 94152b2 Compare May 24, 2024 06:04

THUMarkLau force-pushed the wal-compress-formal-branch branch from e7250f8 to 069795d Compare May 26, 2024 06:25

Caideyipi reviewed May 28, 2024

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THUMarkLau force-pushed the wal-compress-formal-branch branch from eb167a8 to 93a6482 Compare May 31, 2024 00:35

jt2594838 requested changes May 31, 2024

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jt2594838 reviewed Jun 4, 2024

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...tanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/WALInputStream.java Outdated Show resolved Hide resolved

OneSizeFitsQuorum reviewed Jun 11, 2024

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jt2594838 approved these changes Jun 12, 2024

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...tanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/wal/io/WALInputStream.java Show resolved Hide resolved

...st/java/org/apache/iotdb/db/storageengine/dataregion/wal/compression/WALCompressionTest.java Outdated Show resolved Hide resolved

THUMarkLau added 19 commits June 17, 2024 15:08

enable wal compression

8c52f5c

remove metrics in mem table flush task, cache hash code in partial path, use gzip to compress wal batch update metrics

fix bug

693ffb7

fix compilation problem

e2e6bc1

remove useless code

896a357

recover some code

ee3a64f

support compression type in WAL Compress Header

1316653

support multi version WAL

2728057

edit configuration item

e70df23

add log for WAL size

2db27b1

temp for debug

b505d31

fix bug

95c0fd5

remove useless log

23d1743

remove one configuration

8bedc72

use compression rate to update wal disk usage

69ebc89

fix ut

d6ca95b

fix test

4373559

set default to uncompress

27a15c3

fix wal ut

cd8939f

optimize calculating of wal size

610a2e2

THUMarkLau added 13 commits June 17, 2024 15:09

close wal file when the origin size of wal buffer is larger than thre…

8929d41

…shold

add the size of magic string

b2d667f

may be fix the bug

3297ffb

fix with comment

b365347

edit with review

443d1a0

fix test

130930e

add test for wal compression

ad021a7

add hot reload

964bf9b

clean the code to make it more readable

0f17197

reuse the byte buffer if possible

e48b7db

Indicate the encoding of String

76cc139

Edit according to comment

5814812

spotless

d0b76f3

THUMarkLau force-pushed the wal-compress-formal-branch branch from ee76763 to d0b76f3 Compare June 17, 2024 07:22

jt2594838 approved these changes Jun 18, 2024

View reviewed changes

jt2594838 merged commit 0bb4619 into master Jun 18, 2024
38 of 40 checks passed

HTHou deleted the wal-compress-formal-branch branch June 18, 2024 04:51

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Support WAL Compression #12476

Support WAL Compression #12476

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Support WAL Compression #12476

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