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[MXNET-34] Onnx Module to import onnx models into mxnet #9963

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merged 36 commits into from
Mar 14, 2018
Merged

[MXNET-34] Onnx Module to import onnx models into mxnet #9963

merged 36 commits into from
Mar 14, 2018

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anirudhacharya
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@anirudhacharya anirudhacharya commented Mar 2, 2018 •
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Description

Module to import onnx models into mxnet.

Checklist

Essentials

  • Passed code style checking (make lint)
  • Changes are complete (i.e. I finished coding on this PR)
  • All changes have test coverage.
  • Unit tests are added for small changes to verify correctness (e.g. adding a new operator)
  • Code is well-documented:
  • For user-facing API changes, API doc string has been updated.
  • To the my best knowledge, examples are either not affected by this change, or have been fixed to be compatible with this change

Changes

  • API to import onnx models.

Comments

@Roshrini @spidydev @lupesko @reminisce @piiswrong @szha
@nswamy @sandeep-krishnamurthy
@awslabs/aws-deep-learning-sdk

reminisce
reminisce reviewed Mar 2, 2018
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The underscore prefix in the name of the folder _import makes it look like an internal module. Any good reason of naming it in this way?

python/mxnet/contrib/onnx/_import/__init__.py Outdated Show resolved Hide resolved
@anirudhacharya
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For all the test cases to pass for this module, we will need changes in the CI process. It needs Onnx and protobuf in the CI process for the tests to run. Currently the onnx-mxnet project fetches these packages in the CI process -

[Container] 2018/03/02 00:14:07 Running command wget https://github.com/google/protobuf/releases/download/v2.6.1/protobuf-2.6.1.tar.gz
Downloading onnx-1.0.1.tar.gz (763kB)

@anirudhacharya anirudhacharya mentioned this pull request Mar 2, 2018
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@KellenSunderland
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Hi @anirudhacharya, are you blocked by the CI change? You are able to change the CI process along with your PR, and installing two dependencies shouldn't be hard. Just let us know if you'd like help doing this. (To get started you can see how other python deps are installed here: https://github.com/apache/incubator-mxnet/blob/master/tests/ci_build/Dockerfile.cpu and here: https://github.com/apache/incubator-mxnet/blob/master/tests/ci_build/install/install_testdeps.sh for example.)

sandeep-krishnamurthy
sandeep-krishnamurthy reviewed Mar 5, 2018
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Thanks for the contribution.
Few minor comments.

python/mxnet/contrib/onnx/_import/import_helper.py Outdated Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_onnx.py Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_onnx.py Outdated Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_onnx.py Outdated Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/translation_utils/__init__.py Outdated Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/op_translations/reduce_max.py Outdated Show resolved Hide resolved
@anirudhacharya
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@piiswrong can you please take a look at the code. We will keep adding more operator support, but can you review the general design of the module. I think I have addressed all your concerns.

sandeep-krishnamurthy
sandeep-krishnamurthy reviewed Mar 6, 2018
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@sandeep-krishnamurthy sandeep-krishnamurthy left a comment •
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LGTM.
Can you please check PR build failures.

@CodingCat
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Hi, the community has passed to vote about associating the code changes with JIRA (https://lists.apache.org/thread.html/ab22cf0e35f1bce2c3bf3bec2bc5b85a9583a3fe7fd56ba1bbade55f@%3Cdev.mxnet.apache.org%3E)

We have updated the guidelines for contributors in https://cwiki.apache.org/confluence/display/MXNET/Development+Process, please ensure that you have created a JIRA at https://issues.apache.org/jira/projects/MXNET/issues/ to describe your work in this pull request and include the JIRA title in your PR as [MXNET-xxxx] your title where MXNET-xxxx is the JIRA id

Thanks!

marcoabreu
marcoabreu suggested changes Mar 7, 2018
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@anirudhacharya anirudhacharya mentioned this pull request Mar 8, 2018
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@anirudhacharya anirudhacharya changed the title Onnx Module to import onnx models into mxnet [MXNET-34] Onnx Module to import onnx models into mxnet Mar 8, 2018
marcoabreu
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example/onnx/test_super_resolution.py Outdated Show resolved Hide resolved
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@anirudhacharya anirudhacharya mentioned this pull request Mar 9, 2018
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Acharya added 2 commits March 9, 2018 15:20
Onnx Module to import onnx models into mxnet
d80f95a 
* Change package name to onnx from serde.
* Remove onnx install time dependency
* Remove Renamer class
* Add apache license to files.
* Refactor test files to tests/python folder.
* Removed export folder.
* Refactor Attribute COnverter logic

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
Changing the translation and utils file.
23c409a 
Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
Fix method arguments for Python3.5+
b4b6f9a 
Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
marcoabreu
marcoabreu suggested changes Mar 13, 2018
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Two minor changes

tests/python-pytest/onnx/onnx_test.py Outdated Show resolved Hide resolved
tests/python-pytest/onnx/onnx_test.py Outdated Show resolved Hide resolved
Remove logging configuration from test files.
612e2a6 
Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
marcoabreu
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Please add a correctness test

tests/python-pytest/onnx/onnx_test.py Outdated Show resolved Hide resolved
Verify result image in example by hash
a9b2f62 
Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
marcoabreu
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Approved in terms of CI

Roshrini
Roshrini reviewed Mar 13, 2018
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Few comments

python/mxnet/contrib/onnx/_import/import_helper.py Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_model.py Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_model.py Outdated Show resolved Hide resolved
python/mxnet/contrib/onnx/_import/import_helper.py Show resolved Hide resolved
nswamy
nswamy suggested changes Mar 14, 2018
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LGTM, except for a few comments

python/mxnet/test_utils.py Outdated Show resolved Hide resolved
python/mxnet/test_utils.py Outdated Show resolved Hide resolved
python/mxnet/test_utils.py Outdated Show resolved Hide resolved
nswamy
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LGTM, lets merge after the CI tests are run.

@reminisce
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Is there a plan to add a doc page with these changes? Normally we don't expect users to find out APIs by reading the code.

Remove fetching test files by ETag.
b24baba 
Will add it as a separate PR as per review comments.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
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anirudhacharya commented Mar 14, 2018 •
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@reminisce there is a follow up PR with the doc page changes. Please refer - #10140

@nswamy nswamy merged commit 93e0ceb into apache:master Mar 14, 2018
cjolivier01 pushed a commit to cjolivier01/mxnet that referenced this pull request Mar 14, 2018
@anirudhacharya
[MXNET-34] Onnx Module to import onnx models into mxnet (apache#9963)
3611d57 
* Onnx Module to import onnx models into mxnet

* Change package name to onnx from serde.
* Remove onnx install time dependency
* Remove Renamer class
* Add apache license to files.
* Refactor test files to tests/python folder.
* Removed export folder.
* Refactor Attribute COnverter logic

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Changing the translation and utils file.


Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* - Fixed Pylint issues
- Added Sigmoid operator.
- Add onnx, protobuf as CI pipeline dependencies.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Add UTs for reduce ops.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* pylint - newline, whitespace.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

*     Added operators:
    - AvgPool
    - ArgMax
    - ArgMin
    - Abs

    Minor changes in logic for import_onnx

* Added operators:
- Ceil
- Cast
- Constant

* - Added Pad operator support.
- Minor changes for comments

* RandomUniform,Normal,Sub,Mul,Div,Tanh,Relu,Reciprocal,Sqrt operators
added.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* lint fix

* Add protobuf-compile to CI bash script. Add MatMul and Pow operator.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Max,Min,Sum,Reduce operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* BatchNorm,SpatialBN, Split

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Slice,Transpose and Squeeze Operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Onnx tests in CI integration tests.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Addressing Marco's comments

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Floor, LeakyRelu, Elu, PRelu, Softmax, Exp, Log operator.

* Added operators:
- Convolution
- Deconvolution

Refactored convert_operator

* lint fix

* Rebase fix

* Added Maxpool operator

* Adding FullyConnected operator

* Adding operator- GlobalPooling - max and avg
Minor lint fixes.

* Adding operator - Gemm

* Change test Path, LRN and Dropout operator.

* Add asserts for the super_res example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fixing conv test failures.
Removed redundant code

* Update Jenkins job.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Nits: Removing commented out code

* Rebase after Docker PR

* Fetch test files by version number. Verify the high resolution example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fix method arguments for Python3.5+

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove logging configuration from test files.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Verify result image in example by hash

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove fetching test files by ETag.
Will add it as a separate PR as per review comments.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
jinhuang415 pushed a commit to jinhuang415/incubator-mxnet that referenced this pull request Mar 30, 2018
@anirudhacharya
[MXNET-34] Onnx Module to import onnx models into mxnet (apache#9963)
be617fe 
* Onnx Module to import onnx models into mxnet

* Change package name to onnx from serde.
* Remove onnx install time dependency
* Remove Renamer class
* Add apache license to files.
* Refactor test files to tests/python folder.
* Removed export folder.
* Refactor Attribute COnverter logic

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Changing the translation and utils file.


Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* - Fixed Pylint issues
- Added Sigmoid operator.
- Add onnx, protobuf as CI pipeline dependencies.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Add UTs for reduce ops.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* pylint - newline, whitespace.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

*     Added operators:
    - AvgPool
    - ArgMax
    - ArgMin
    - Abs

    Minor changes in logic for import_onnx

* Added operators:
- Ceil
- Cast
- Constant

* - Added Pad operator support.
- Minor changes for comments

* RandomUniform,Normal,Sub,Mul,Div,Tanh,Relu,Reciprocal,Sqrt operators
added.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* lint fix

* Add protobuf-compile to CI bash script. Add MatMul and Pow operator.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Max,Min,Sum,Reduce operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* BatchNorm,SpatialBN, Split

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Slice,Transpose and Squeeze Operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Onnx tests in CI integration tests.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Addressing Marco's comments

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Floor, LeakyRelu, Elu, PRelu, Softmax, Exp, Log operator.

* Added operators:
- Convolution
- Deconvolution

Refactored convert_operator

* lint fix

* Rebase fix

* Added Maxpool operator

* Adding FullyConnected operator

* Adding operator- GlobalPooling - max and avg
Minor lint fixes.

* Adding operator - Gemm

* Change test Path, LRN and Dropout operator.

* Add asserts for the super_res example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fixing conv test failures.
Removed redundant code

* Update Jenkins job.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Nits: Removing commented out code

* Rebase after Docker PR

* Fetch test files by version number. Verify the high resolution example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fix method arguments for Python3.5+

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove logging configuration from test files.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Verify result image in example by hash

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove fetching test files by ETag.
Will add it as a separate PR as per review comments.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
@anirudhacharya anirudhacharya deleted the onnx1 branch March 31, 2018 20:10
rahul003 pushed a commit to rahul003/mxnet that referenced this pull request Jun 4, 2018
@anirudhacharya @nswamy
[MXNET-34] Onnx Module to import onnx models into mxnet (apache#9963)
37e8947 
* Onnx Module to import onnx models into mxnet

* Change package name to onnx from serde.
* Remove onnx install time dependency
* Remove Renamer class
* Add apache license to files.
* Refactor test files to tests/python folder.
* Removed export folder.
* Refactor Attribute COnverter logic

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Changing the translation and utils file.


Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* - Fixed Pylint issues
- Added Sigmoid operator.
- Add onnx, protobuf as CI pipeline dependencies.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Add UTs for reduce ops.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* pylint - newline, whitespace.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

*     Added operators:
    - AvgPool
    - ArgMax
    - ArgMin
    - Abs

    Minor changes in logic for import_onnx

* Added operators:
- Ceil
- Cast
- Constant

* - Added Pad operator support.
- Minor changes for comments

* RandomUniform,Normal,Sub,Mul,Div,Tanh,Relu,Reciprocal,Sqrt operators
added.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* lint fix

* Add protobuf-compile to CI bash script. Add MatMul and Pow operator.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Max,Min,Sum,Reduce operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* BatchNorm,SpatialBN, Split

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Slice,Transpose and Squeeze Operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Onnx tests in CI integration tests.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Addressing Marco's comments

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Floor, LeakyRelu, Elu, PRelu, Softmax, Exp, Log operator.

* Added operators:
- Convolution
- Deconvolution

Refactored convert_operator

* lint fix

* Rebase fix

* Added Maxpool operator

* Adding FullyConnected operator

* Adding operator- GlobalPooling - max and avg
Minor lint fixes.

* Adding operator - Gemm

* Change test Path, LRN and Dropout operator.

* Add asserts for the super_res example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fixing conv test failures.
Removed redundant code

* Update Jenkins job.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Nits: Removing commented out code

* Rebase after Docker PR

* Fetch test files by version number. Verify the high resolution example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fix method arguments for Python3.5+

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove logging configuration from test files.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Verify result image in example by hash

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove fetching test files by ETag.
Will add it as a separate PR as per review comments.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
zheng-da pushed a commit to zheng-da/incubator-mxnet that referenced this pull request Jun 28, 2018
@anirudhacharya @zheng-da
[MXNET-34] Onnx Module to import onnx models into mxnet (apache#9963)
c4b0b97 
* Onnx Module to import onnx models into mxnet

* Change package name to onnx from serde.
* Remove onnx install time dependency
* Remove Renamer class
* Add apache license to files.
* Refactor test files to tests/python folder.
* Removed export folder.
* Refactor Attribute COnverter logic

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Changing the translation and utils file.


Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* - Fixed Pylint issues
- Added Sigmoid operator.
- Add onnx, protobuf as CI pipeline dependencies.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Add UTs for reduce ops.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* pylint - newline, whitespace.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

*     Added operators:
    - AvgPool
    - ArgMax
    - ArgMin
    - Abs

    Minor changes in logic for import_onnx

* Added operators:
- Ceil
- Cast
- Constant

* - Added Pad operator support.
- Minor changes for comments

* RandomUniform,Normal,Sub,Mul,Div,Tanh,Relu,Reciprocal,Sqrt operators
added.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* lint fix

* Add protobuf-compile to CI bash script. Add MatMul and Pow operator.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Max,Min,Sum,Reduce operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* BatchNorm,SpatialBN, Split

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Slice,Transpose and Squeeze Operators.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Onnx tests in CI integration tests.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Addressing Marco's comments

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Floor, LeakyRelu, Elu, PRelu, Softmax, Exp, Log operator.

* Added operators:
- Convolution
- Deconvolution

Refactored convert_operator

* lint fix

* Rebase fix

* Added Maxpool operator

* Adding FullyConnected operator

* Adding operator- GlobalPooling - max and avg
Minor lint fixes.

* Adding operator - Gemm

* Change test Path, LRN and Dropout operator.

* Add asserts for the super_res example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fixing conv test failures.
Removed redundant code

* Update Jenkins job.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Nits: Removing commented out code

* Rebase after Docker PR

* Fetch test files by version number. Verify the high resolution example.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Fix method arguments for Python3.5+

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove logging configuration from test files.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Verify result image in example by hash

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>

* Remove fetching test files by ETag.
Will add it as a separate PR as per review comments.

Signed-off-by: Acharya <aanirud@8c85904b0bf4.ant.amazon.com>
@anirudhacharya anirudhacharya mentioned this pull request Jun 28, 2018
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@marcoabreu marcoabreu marcoabreu approved these changes

@Roshrini Roshrini Roshrini left review comments

@reminisce reminisce reminisce left review comments

@sandeep-krishnamurthy sandeep-krishnamurthy sandeep-krishnamurthy left review comments

@piiswrong piiswrong piiswrong left review comments

@nswamy nswamy nswamy approved these changes

@szha szha Awaiting requested review from szha szha is a code owner

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@anirudhacharya @KellenSunderland @CodingCat @reminisce @piiswrong @nswamy @sandeep-krishnamurthy @Roshrini @marcoabreu @rajanksin