Merge branch 'master' into csv-date-inferring

docs/sql-migration-guide-upgrade.md

@@ -35,7 +35,7 @@ displayTitle: Spark SQL Upgrading Guide
 
   - Spark applications which are built with Spark version 2.4 and prior, and call methods of `UserDefinedFunction`, need to be re-compiled with Spark 3.0, as they are not binary compatible with Spark 3.0.
 
-  - Since Spark 3.0, CSV datasource uses java.time API for parsing and generating CSV content. New formatting implementation supports date/timestamp patterns conformed to ISO 8601. To switch back to the implementation used in Spark 2.4 and earlier, set `spark.sql.legacy.timeParser.enabled` to `true`.
+  - Since Spark 3.0, CSV/JSON datasources use java.time API for parsing and generating CSV/JSON content. In Spark version 2.4 and earlier, java.text.SimpleDateFormat is used for the same purpuse with fallbacks to the parsing mechanisms of Spark 2.0 and 1.x. For example, `2018-12-08 10:39:21.123` with the pattern `yyyy-MM-dd'T'HH:mm:ss.SSS` cannot be parsed since Spark 3.0 because the timestamp does not match to the pattern but it can be parsed by earlier Spark versions due to a fallback to `Timestamp.valueOf`. To parse the same timestamp since Spark 3.0, the pattern should be `yyyy-MM-dd HH:mm:ss.SSS`. To switch back to the implementation used in Spark 2.4 and earlier, set `spark.sql.legacy.timeParser.enabled` to `true`.
 
   - In Spark version 2.4 and earlier, CSV datasource converts a malformed CSV string to a row with all `null`s in the PERMISSIVE mode. Since Spark 3.0, the returned row can contain non-`null` fields if some of CSV column values were parsed and converted to desired types successfully.
 

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/csv/CSVInferSchema.scala

@@ -24,13 +24,13 @@ import scala.util.control.Exception.allCatch
 import org.apache.spark.rdd.RDD
 import org.apache.spark.sql.catalyst.analysis.TypeCoercion
 import org.apache.spark.sql.catalyst.expressions.ExprUtils
-import org.apache.spark.sql.catalyst.util.{DateFormatter, DateTimeFormatter}
+import org.apache.spark.sql.catalyst.util.{DateFormatter, TimestampFormatter}
 import org.apache.spark.sql.types._
 
 class CSVInferSchema(val options: CSVOptions) extends Serializable {
 
   @transient
-  private lazy val timeParser = DateTimeFormatter(
+  private lazy val timestampParser = TimestampFormatter(
     options.timestampFormat,
     options.timeZone,
     options.locale)
@@ -167,7 +167,7 @@ class CSVInferSchema(val options: CSVOptions) extends Serializable {
   }
 
   private def tryParseTimestamp(field: String): DataType = {
-    if ((allCatch opt timeParser.parse(field)).isDefined) {
+    if ((allCatch opt timestampParser.parse(field)).isDefined) {
       TimestampType
     } else {
       tryParseDate(field)

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/csv/UnivocityGenerator.scala

@@ -22,7 +22,7 @@ import java.io.Writer
 import com.univocity.parsers.csv.CsvWriter
 
 import org.apache.spark.sql.catalyst.InternalRow
-import org.apache.spark.sql.catalyst.util.{DateFormatter, DateTimeFormatter}
+import org.apache.spark.sql.catalyst.util.{DateFormatter, TimestampFormatter}
 import org.apache.spark.sql.types._
 
 class UnivocityGenerator(
@@ -41,18 +41,18 @@ class UnivocityGenerator(
   private val valueConverters: Array[ValueConverter] =
     schema.map(_.dataType).map(makeConverter).toArray
 
-  private val timeFormatter = DateTimeFormatter(
+  private val timestampFormatter = TimestampFormatter(
     options.timestampFormat,
     options.timeZone,
     options.locale)
-  private val dateFormatter = DateFormatter(options.dateFormat, options.timeZone, options.locale)
+  private val dateFormatter = DateFormatter(options.dateFormat, options.locale)
 
   private def makeConverter(dataType: DataType): ValueConverter = dataType match {
     case DateType =>
       (row: InternalRow, ordinal: Int) => dateFormatter.format(row.getInt(ordinal))
 
     case TimestampType =>
-      (row: InternalRow, ordinal: Int) => timeFormatter.format(row.getLong(ordinal))
+      (row: InternalRow, ordinal: Int) => timestampFormatter.format(row.getLong(ordinal))
 
     case udt: UserDefinedType[_] => makeConverter(udt.sqlType)
 

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/csv/UnivocityParser.scala

@@ -74,11 +74,11 @@ class UnivocityParser(
 
   private val row = new GenericInternalRow(requiredSchema.length)
 
-  private val timeFormatter = DateTimeFormatter(
+  private val timestampFormatter = TimestampFormatter(
     options.timestampFormat,
     options.timeZone,
     options.locale)
-  private val dateFormatter = DateFormatter(options.dateFormat, options.timeZone, options.locale)
+  private val dateFormatter = DateFormatter(options.dateFormat, options.locale)
 
   // Retrieve the raw record string.
   private def getCurrentInput: UTF8String = {
@@ -158,7 +158,7 @@ class UnivocityParser(
       }
 
     case _: TimestampType => (d: String) =>
-      nullSafeDatum(d, name, nullable, options)(timeFormatter.parse)
+      nullSafeDatum(d, name, nullable, options)(timestampFormatter.parse)
 
     case _: DateType => (d: String) =>
       nullSafeDatum(d, name, nullable, options)(dateFormatter.parse)
@@ -239,6 +239,7 @@ class UnivocityParser(
         } catch {
           case NonFatal(e) =>
             badRecordException = badRecordException.orElse(Some(e))
+            row.setNullAt(i)
         }
         i += 1
       }

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/json/JSONOptions.scala

@@ -21,7 +21,6 @@ import java.nio.charset.{Charset, StandardCharsets}
 import java.util.{Locale, TimeZone}
 
 import com.fasterxml.jackson.core.{JsonFactory, JsonParser}
-import org.apache.commons.lang3.time.FastDateFormat
 
 import org.apache.spark.internal.Logging
 import org.apache.spark.sql.catalyst.util._
@@ -82,13 +81,10 @@ private[sql] class JSONOptions(
   val timeZone: TimeZone = DateTimeUtils.getTimeZone(
     parameters.getOrElse(DateTimeUtils.TIMEZONE_OPTION, defaultTimeZoneId))
 
-  // Uses `FastDateFormat` which can be direct replacement for `SimpleDateFormat` and thread-safe.
-  val dateFormat: FastDateFormat =
-    FastDateFormat.getInstance(parameters.getOrElse("dateFormat", "yyyy-MM-dd"), locale)
+  val dateFormat: String = parameters.getOrElse("dateFormat", "yyyy-MM-dd")
 
-  val timestampFormat: FastDateFormat =
-    FastDateFormat.getInstance(
-      parameters.getOrElse("timestampFormat", "yyyy-MM-dd'T'HH:mm:ss.SSSXXX"), timeZone, locale)
+  val timestampFormat: String =
+    parameters.getOrElse("timestampFormat", "yyyy-MM-dd'T'HH:mm:ss.SSSXXX")
 
   val multiLine = parameters.get("multiLine").map(_.toBoolean).getOrElse(false)
 

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/json/JacksonGenerator.scala

@@ -23,7 +23,7 @@ import com.fasterxml.jackson.core._
 
 import org.apache.spark.sql.catalyst.InternalRow
 import org.apache.spark.sql.catalyst.expressions.SpecializedGetters
-import org.apache.spark.sql.catalyst.util.{ArrayData, DateTimeUtils, MapData}
+import org.apache.spark.sql.catalyst.util._
 import org.apache.spark.sql.types._
 
 /**
@@ -77,6 +77,12 @@ private[sql] class JacksonGenerator(
 
   private val lineSeparator: String = options.lineSeparatorInWrite
 
+  private val timestampFormatter = TimestampFormatter(
+    options.timestampFormat,
+    options.timeZone,
+    options.locale)
+  private val dateFormatter = DateFormatter(options.dateFormat, options.locale)
+
   private def makeWriter(dataType: DataType): ValueWriter = dataType match {
     case NullType =>
       (row: SpecializedGetters, ordinal: Int) =>
@@ -116,14 +122,12 @@ private[sql] class JacksonGenerator(
 
     case TimestampType =>
       (row: SpecializedGetters, ordinal: Int) =>
-        val timestampString =
-          options.timestampFormat.format(DateTimeUtils.toJavaTimestamp(row.getLong(ordinal)))
+        val timestampString = timestampFormatter.format(row.getLong(ordinal))
         gen.writeString(timestampString)
 
     case DateType =>
       (row: SpecializedGetters, ordinal: Int) =>
-        val dateString =
-          options.dateFormat.format(DateTimeUtils.toJavaDate(row.getInt(ordinal)))
+        val dateString = dateFormatter.format(row.getInt(ordinal))
         gen.writeString(dateString)
 
     case BinaryType =>

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/json/JacksonParser.scala

@@ -55,6 +55,12 @@ class JacksonParser(
   private val factory = new JsonFactory()
   options.setJacksonOptions(factory)
 
+  private val timestampFormatter = TimestampFormatter(
+    options.timestampFormat,
+    options.timeZone,
+    options.locale)
+  private val dateFormatter = DateFormatter(options.dateFormat, options.locale)
+
   /**
    * Create a converter which converts the JSON documents held by the `JsonParser`
    * to a value according to a desired schema. This is a wrapper for the method
@@ -218,17 +224,7 @@ class JacksonParser(
     case TimestampType =>
       (parser: JsonParser) => parseJsonToken[java.lang.Long](parser, dataType) {
         case VALUE_STRING if parser.getTextLength >= 1 =>
-          val stringValue = parser.getText
-          // This one will lose microseconds parts.
-          // See https://issues.apache.org/jira/browse/SPARK-10681.
-          Long.box {
-            Try(options.timestampFormat.parse(stringValue).getTime * 1000L)
-              .getOrElse {
-                // If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
-                // compatibility.
-                DateTimeUtils.stringToTime(stringValue).getTime * 1000L
-              }
-          }
+          timestampFormatter.parse(parser.getText)
 
         case VALUE_NUMBER_INT =>
           parser.getLongValue * 1000000L
@@ -237,22 +233,7 @@ class JacksonParser(
     case DateType =>
       (parser: JsonParser) => parseJsonToken[java.lang.Integer](parser, dataType) {
         case VALUE_STRING if parser.getTextLength >= 1 =>
-          val stringValue = parser.getText
-          // This one will lose microseconds parts.
-          // See https://issues.apache.org/jira/browse/SPARK-10681.x
-          Int.box {
-            Try(DateTimeUtils.millisToDays(options.dateFormat.parse(stringValue).getTime))
-              .orElse {
-                // If it fails to parse, then tries the way used in 2.0 and 1.x for backwards
-                // compatibility.
-                Try(DateTimeUtils.millisToDays(DateTimeUtils.stringToTime(stringValue).getTime))
-              }
-              .getOrElse {
-                // In Spark 1.5.0, we store the data as number of days since epoch in string.
-                // So, we just convert it to Int.
-                stringValue.toInt
-              }
-          }
+          dateFormatter.parse(parser.getText)
       }
 
     case BinaryType =>

sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/optimizer/subquery.scala

@@ -19,7 +19,7 @@ package org.apache.spark.sql.catalyst.optimizer
 
 import scala.collection.mutable.ArrayBuffer
 
-import org.apache.spark.sql.catalyst.InternalRow
+import org.apache.spark.sql.AnalysisException
 import org.apache.spark.sql.catalyst.expressions._
 import org.apache.spark.sql.catalyst.expressions.SubExprUtils._
 import org.apache.spark.sql.catalyst.expressions.aggregate._
@@ -43,31 +43,53 @@ import org.apache.spark.sql.types._
  *    condition.
  */
 object RewritePredicateSubquery extends Rule[LogicalPlan] with PredicateHelper {
-  private def dedupJoin(joinPlan: LogicalPlan): LogicalPlan = joinPlan match {
+
+  private def buildJoin(
+      outerPlan: LogicalPlan,
+      subplan: LogicalPlan,
+      joinType: JoinType,
+      condition: Option[Expression]): Join = {
+    // Deduplicate conflicting attributes if any.
+    val dedupSubplan = dedupSubqueryOnSelfJoin(outerPlan, subplan, None, condition)
+    Join(outerPlan, dedupSubplan, joinType, condition)
+  }
+
+  private def dedupSubqueryOnSelfJoin(
+      outerPlan: LogicalPlan,
+      subplan: LogicalPlan,
+      valuesOpt: Option[Seq[Expression]],
+      condition: Option[Expression] = None): LogicalPlan = {
     // SPARK-21835: It is possibly that the two sides of the join have conflicting attributes,
     // the produced join then becomes unresolved and break structural integrity. We should
-    // de-duplicate conflicting attributes. We don't use transformation here because we only
-    // care about the most top join converted from correlated predicate subquery.
-    case j @ Join(left, right, joinType @ (LeftSemi | LeftAnti | ExistenceJoin(_)), joinCond) =>
-      val duplicates = right.outputSet.intersect(left.outputSet)
-      if (duplicates.nonEmpty) {
-        val aliasMap = AttributeMap(duplicates.map { dup =>
-          dup -> Alias(dup, dup.toString)()
-        }.toSeq)
-        val aliasedExpressions = right.output.map { ref =>
-          aliasMap.getOrElse(ref, ref)
-        }
-        val newRight = Project(aliasedExpressions, right)
-        val newJoinCond = joinCond.map { condExpr =>
-          condExpr transform {
-            case a: Attribute => aliasMap.getOrElse(a, a).toAttribute
+    // de-duplicate conflicting attributes.
+    // SPARK-26078: it may also happen that the subquery has conflicting attributes with the outer
+    // values. In this case, the resulting join would contain trivially true conditions (eg.
+    // id#3 = id#3) which cannot be de-duplicated after. In this method, if there are conflicting
+    // attributes in the join condition, the subquery's conflicting attributes are changed using
+    // a projection which aliases them and resolves the problem.
+    val outerReferences = valuesOpt.map(values =>
+      AttributeSet.fromAttributeSets(values.map(_.references))).getOrElse(AttributeSet.empty)
+    val outerRefs = outerPlan.outputSet ++ outerReferences
+    val duplicates = outerRefs.intersect(subplan.outputSet)
+    if (duplicates.nonEmpty) {
+      condition.foreach { e =>
+          val conflictingAttrs = e.references.intersect(duplicates)
+          if (conflictingAttrs.nonEmpty) {
+            throw new AnalysisException("Found conflicting attributes " +
+              s"${conflictingAttrs.mkString(",")} in the condition joining outer plan:\n  " +
+              s"$outerPlan\nand subplan:\n  $subplan")
           }
-        }
-        Join(left, newRight, joinType, newJoinCond)
-      } else {
-        j
       }
-    case _ => joinPlan
+      val rewrites = AttributeMap(duplicates.map { dup =>
+        dup -> Alias(dup, dup.toString)()
+      }.toSeq)
+      val aliasedExpressions = subplan.output.map { ref =>
+        rewrites.getOrElse(ref, ref)
+      }
+      Project(aliasedExpressions, subplan)
+    } else {
+      subplan
+    }
   }
 
   def apply(plan: LogicalPlan): LogicalPlan = plan transform {
@@ -85,25 +107,27 @@ object RewritePredicateSubquery extends Rule[LogicalPlan] with PredicateHelper {
       withSubquery.foldLeft(newFilter) {
         case (p, Exists(sub, conditions, _)) =>
           val (joinCond, outerPlan) = rewriteExistentialExpr(conditions, p)
-          // Deduplicate conflicting attributes if any.
-          dedupJoin(Join(outerPlan, sub, LeftSemi, joinCond))
+          buildJoin(outerPlan, sub, LeftSemi, joinCond)
         case (p, Not(Exists(sub, conditions, _))) =>
           val (joinCond, outerPlan) = rewriteExistentialExpr(conditions, p)
-          // Deduplicate conflicting attributes if any.
-          dedupJoin(Join(outerPlan, sub, LeftAnti, joinCond))
+          buildJoin(outerPlan, sub, LeftAnti, joinCond)
         case (p, InSubquery(values, ListQuery(sub, conditions, _, _))) =>
-          val inConditions = values.zip(sub.output).map(EqualTo.tupled)
-          val (joinCond, outerPlan) = rewriteExistentialExpr(inConditions ++ conditions, p)
           // Deduplicate conflicting attributes if any.
-          dedupJoin(Join(outerPlan, sub, LeftSemi, joinCond))
+          val newSub = dedupSubqueryOnSelfJoin(p, sub, Some(values))
+          val inConditions = values.zip(newSub.output).map(EqualTo.tupled)
+          val (joinCond, outerPlan) = rewriteExistentialExpr(inConditions ++ conditions, p)
+          Join(outerPlan, newSub, LeftSemi, joinCond)
         case (p, Not(InSubquery(values, ListQuery(sub, conditions, _, _)))) =>
           // This is a NULL-aware (left) anti join (NAAJ) e.g. col NOT IN expr
           // Construct the condition. A NULL in one of the conditions is regarded as a positive
           // result; such a row will be filtered out by the Anti-Join operator.
 
           // Note that will almost certainly be planned as a Broadcast Nested Loop join.
           // Use EXISTS if performance matters to you.
-          val inConditions = values.zip(sub.output).map(EqualTo.tupled)
+
+          // Deduplicate conflicting attributes if any.
+          val newSub = dedupSubqueryOnSelfJoin(p, sub, Some(values))
+          val inConditions = values.zip(newSub.output).map(EqualTo.tupled)
           val (joinCond, outerPlan) = rewriteExistentialExpr(inConditions, p)
           // Expand the NOT IN expression with the NULL-aware semantic
           // to its full form. That is from:
@@ -118,8 +142,7 @@ object RewritePredicateSubquery extends Rule[LogicalPlan] with PredicateHelper {
           // will have the final conditions in the LEFT ANTI as
           // (A.A1 = B.B1 OR ISNULL(A.A1 = B.B1)) AND (B.B2 = A.A2) AND B.B3 > 1
           val finalJoinCond = (nullAwareJoinConds ++ conditions).reduceLeft(And)
-          // Deduplicate conflicting attributes if any.
-          dedupJoin(Join(outerPlan, sub, LeftAnti, Option(finalJoinCond)))
+          Join(outerPlan, newSub, LeftAnti, Option(finalJoinCond))
         case (p, predicate) =>
           val (newCond, inputPlan) = rewriteExistentialExpr(Seq(predicate), p)
           Project(p.output, Filter(newCond.get, inputPlan))
@@ -140,16 +163,16 @@ object RewritePredicateSubquery extends Rule[LogicalPlan] with PredicateHelper {
       e transformUp {
         case Exists(sub, conditions, _) =>
           val exists = AttributeReference("exists", BooleanType, nullable = false)()
-          // Deduplicate conflicting attributes if any.
-          newPlan = dedupJoin(
-            Join(newPlan, sub, ExistenceJoin(exists), conditions.reduceLeftOption(And)))
+          newPlan =
+            buildJoin(newPlan, sub, ExistenceJoin(exists), conditions.reduceLeftOption(And))
           exists
         case InSubquery(values, ListQuery(sub, conditions, _, _)) =>
           val exists = AttributeReference("exists", BooleanType, nullable = false)()
-          val inConditions = values.zip(sub.output).map(EqualTo.tupled)
-          val newConditions = (inConditions ++ conditions).reduceLeftOption(And)
           // Deduplicate conflicting attributes if any.
-          newPlan = dedupJoin(Join(newPlan, sub, ExistenceJoin(exists), newConditions))
+          val newSub = dedupSubqueryOnSelfJoin(newPlan, sub, Some(values))
+          val inConditions = values.zip(newSub.output).map(EqualTo.tupled)
+          val newConditions = (inConditions ++ conditions).reduceLeftOption(And)
+          newPlan = Join(newPlan, newSub, ExistenceJoin(exists), newConditions)
           exists
       }
     }