address the problems with the boxrestore test errors.
- Update box2001 so it's bit-for-bit with different blocks/decomps/pe counts.
- Initialize bathymetry values at all gridcells when bathymetry_format='default' and use_bathymetry=.false.

…parisons

…non-zero values

  over land by default and this causes problems with land block elimination and
  comparisons of different decompositions.  Does not affect science.
- Update omp_suite to use different block sizes in comparisons