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@appliedbinf

Applied Bioinformatics Laboratory

ABiL offers a wide range of bioinformatics services to address data analysis and workforce development needs.

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  1. covid19-event-risk-planner covid19-event-risk-planner Public

    COVID19 risk planner R-Shiny application

    R 47 22

  2. pima pima Public

    Plasmid and antimicrobial resistance pipeline

    Python 16 3

  3. el_gato el_gato Public

    Python 9 1

  4. 2021-QBiosWorkshop 2021-QBiosWorkshop Public

    R shiny examples for QBios Workshop May 2021

    4 4

  5. pima-docker pima-docker Public

    Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker

    Python 3 1

  6. URDO-SMOREd URDO-SMOREd Public

    Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. S…

    Python 1 1

Repositories

Showing 10 of 20 repositories
  • el_gato Public
    appliedbinf/el_gato’s past year of commit activity
    Python 9 MIT 1 0 0 Updated Sep 30, 2024
  • pima-docker2 Public

    Volume based Pima Docker

    appliedbinf/pima-docker2’s past year of commit activity
    Python 0 0 0 0 Updated Nov 23, 2023
  • pima-docker Public

    Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker

    appliedbinf/pima-docker’s past year of commit activity
    Python 3 1 0 0 Updated Nov 13, 2023
  • pima Public

    Plasmid and antimicrobial resistance pipeline

    appliedbinf/pima’s past year of commit activity
    Python 16 3 2 1 Updated Sep 13, 2023
  • c19r-app Public
    appliedbinf/c19r-app’s past year of commit activity
    R 0 1 0 0 Updated May 8, 2023
  • c19rdata Public
    appliedbinf/c19rdata’s past year of commit activity
    R 0 1 2 0 Updated Mar 17, 2023
  • hope Public

    Assessment of homopolymer performance of ONT sequencing

    appliedbinf/hope’s past year of commit activity
    Rust 0 0 0 0 Updated Jan 6, 2023
  • pima_md Public

    This implementation of PIMA uses Markdown instead of tectonic. Operation is largely the same though the packages used slightly different.

    appliedbinf/pima_md’s past year of commit activity
    Python 0 2 0 0 Updated Dec 28, 2022
  • covid19-event-risk-planner Public

    COVID19 risk planner R-Shiny application

    appliedbinf/covid19-event-risk-planner’s past year of commit activity
    R 47 22 0 0 Updated Aug 6, 2022
  • mycetomatis_analysis_workflow Public

    Collection of scripts describing how Mycetomatis datasets were processed

    appliedbinf/mycetomatis_analysis_workflow’s past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Jul 27, 2022
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