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1. TAPseq_manuscript TAPseq_manuscript Public

   Analysis code for the TAP-seq manuscript.

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2. TAPseq_workflow TAPseq_workflow Public

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3. TAPseq TAPseq Public

   R package to design PCR primers for TAP-seq

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4. ENCODE_CRISPR_data ENCODE_CRISPR_data Public

   Re-analyze and harmonize Gasperini et al., 2019, Schraivogel et al., 2020 and Nasser et al., 2021 data for ENCODE distal regulation E-G benchmarking

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5. ENCODE_eg_correlation_predictors ENCODE_eg_correlation_predictors Public

   Compute correlation between chromatin accessibility at cCREs and accessibility at promoters or observed gene expression.

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6. CRISPRiScreen CRISPRiScreen Public

   Analysis pipeline to identify enhancer-target gene interactions from TAP-seq or Perturb-seq experiments.

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