This is the code for Johnson et al 2024: "Transcriptional and evolutionary analysis of ABCDE model genes in petty spurge (Euphorbia peplus L.) cyathium ".
Scripts are numbered in sequential order. All .sh code was run in a working directory on a Cornell BioHPC server using SLURM with the command "sbatch [scriptname].sh" unless otherwise noted. All .R code was run in RStudio on a personal computer. The raw data generated for this project can be found in NCBI GenBank under the accession PRJNA1063728.
Feel free to contact me through Github if you have any questions about this code. The corresponding author on the paper is Margaret Frank (mhf47@cornell.edu), please contact Dr. Frank with any other questions about the project.