CRISPRDetect-parsing

This Script summarizes the results of a CRISPR finding tool, CRISPRDetect in a tab-delimited file.

USE:

python SummarizeCRISPRDetect.py <CRISPRDetect_result_file> <Parsed_File>

OUTPUT_FORMAT:(TAB separated)

primary_Repeat, alternative_repeat, repeat_no, repeat_len, identity, spacer_length, contig/seq_name, contig/seq_end_position, questionable_array(yes/no), score, LeftFlankSeq, RightFlankSeq

Silent line 60 if you do not want to print/see the results on commandline

Requirements

=> python 2.7 => packages: sys, numpy

Citing CRISPRDetect:

Biswas A et al (2016). https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-2627-0