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5.2.0
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@raphenya raphenya released this 12 Apr 23:33
· 152 commits to master since this release
5.2.0
8756f1f
  • Added workflow to publish docker images automatically
  • Added a workaround for failing certificates verification when downloading CARD data
  • Updated and cleanup README
  • Added a new feature to automatically load CARD databases into RGI, termed rgi auto_load
  • Added kma aligner as default for rgi bwt as it shows better alignments over bowtie2 and bwa
  • Updated RGI bwt read mapping results at allele level report (output_prefix.allele_mapping_data.txt) to include depth, SNPs, Consensus Sequence DNA, Consensus Sequence Protein
  • Added support for gz and bz2 input FASTA for rgi main
  • rgi bwt now uses homolog, variant, rRNA gene variant, overexpression, and knockout models
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