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Two different implementations for the Sequence Alignment problem from the Algorithm Design textbook by Jon Kleinberg and Éva Tardos.

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CSCI 570 Project: Sequence Alignment

This repository contains the code for two different solutions of the Sequence Alignment problem from the Algorithm Design textbook by Jon Kleinberg and Éva Tardos.

A description of the problem can be found on the dynamic programming slides from the book's website.

Usage

A description of the input file input.txt required can be found in the project description.

The scripts can be run through the following commands:

./5840387942_6161762888_basic.sh
./5840387942_6161762888_efficient.sh

Running the scripts will generate the output file output.txt which contains the solution as required by the project description.

Results

CPU Usage: CPU Usage Screenshot

Memory Usage Mem Usage Screenshot

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Two different implementations for the Sequence Alignment problem from the Algorithm Design textbook by Jon Kleinberg and Éva Tardos.

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