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1. waldronlab/lefser waldronlab/lefser Public

   R implementation of the LEfSe method

   R 51 5

2. OpenOmics/ervx OpenOmics/ervx Public

   Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA

   Python 1 1

3. QSAR_classification QSAR_classification Public

   Unregularized logistic regression, logistic with lasso, logistic with ridge, radial SVM, and random forests are used here to classify each of 1,055 molecules as biodegradable or not biodegradable b…

   R

4. cancerRNA_clustering cancerRNA_clustering Public

   I use unsupervised learning methods (PCA, Hierarchical Clustering, and K-means Clustering) to subgroup 801 cancer samples into one of 5 clusters based on their gene expression profiles, 20, 531 gen…

5. OpenOmics/chrom-seek OpenOmics/chrom-seek Public

   An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq

   Python 5 2

6. EventsDatabase EventsDatabase Public

   PostgreSQL Database

   SQL 1