Script for iterating through multiple files in PRSice2
#casecontrol gwas
for i in autismdanerforprsice sczprsice; do Rscript PRSice2.R --dir . --prsice ./PRSice2_linux --base ./pgssumstats/${i}.txt --target ~/SFARI/liftOverPlink/SSC_1Mv3/SSCimputationfile-updated --thread 10 --stat OR --binary-target T --out ./PRSice2results/SSC_1Mv3_${i} --bar-levels 0.0001,0.001,0.01,0.1,0.25,0.5,0.75,1 --no-regress --fastscore; done
#quantitative trait gwas
for i in eduyears SQprsice cognitionprsice rmetprsice empathyprsice friendshipmtagprsice familymtagprsice EQ; do Rscript PRSice2.R --dir . --prsice ./PRSice2_linux --base ./pgssumstats/${i}.txt --target ~/SFARI/liftOverPlink/SSC_1Mv3/SSCimputationfile-updated --thread 10 --stat BETA --binary-target T --out ./PRSice2results/SSC_1Mv3_${i} --bar-levels 0.0001,0.001,0.01,0.1,0.25,0.5,0.75,1 --no-regress --fastscore; done