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fix: Index columns removed on s3.to_parquet #2655

Merged

jaidisido merged 28 commits into aws:main from robert-schmidtke:bugfix/index-cols

Feb 16, 2024

Contributor

robert-schmidtke commented Feb 2, 2024 •

edited

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Feature or Bugfix

Bugfix

Detail

Fixes index columns not being written on a second write. The issue was that they were ignored as part of processing columns types. I have aligned the handling of index columns with regular columns. I have added a test for that.

Because I touched code that introduced the ability to partition by index columns, I added a test for that as well, asserting the current behavior. Please do check that test and see if it codifies the assumptions and expected behavior for partitioning on index columns correctly.

Relates

By submitting this pull request, I confirm that my contribution is made under the terms of the Apache 2.0 license.


          first go at a failing test

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          pass missing dataset flag in test

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          because we partition, do not specify full parquet paths during write

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Robert Schmidtke added 3 commits

February 5, 2024 09:02


          use proper path in tests


          use reset_index to allow dropping the entire index


          test partitioning on full and partial index

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Robert Schmidtke added 3 commits

February 5, 2024 15:05


          Merge branch 'main' into bugfix/index-cols

ba36a5b


          need to validate schema on read for issue to surface

f0d99de


          need to sort on index

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Robert Schmidtke added 2 commits

February 5, 2024 16:48


          cross-test without partitioning

96deab3


          print assertion error for remote debugging

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          simplify test to just assert schema validation

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          consistently handle regular and index columns casts

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          use equality assertion utility, drop unnecessary sort

c4df679

Robert Schmidtke added 2 commits

February 8, 2024 11:55


          move packaging import to correct location

fbf3eaf


          fix types for promotion kwargs

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          test and handle unnamed index levels as well

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robert-schmidtke marked this pull request as ready for review

February 8, 2024 12:07

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jaidisido requested review from kukushking and LeonLuttenberger

February 12, 2024 09:41

kukushking reviewed

View reviewed changes

awswrangler/_utils.py

-                  return _table_to_df(pa.concat_tables(tables, promote=True), kwargs=kwargs)
+                  promote_kwargs: dict[str, bool | str] = {"promote": True}
+                  if version.parse(pa.__version__) >= version.parse("14.0.0"):
+                      promote_kwargs = {"promote_options": "default"}

Contributor

kukushking Feb 12, 2024 •

edited

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Can you clarify please - this was needed because schemas of the individual tables were different due to different index column types or empty values?

Contributor Author

robert-schmidtke Feb 12, 2024

This particular change wasn't needed for the fix to work. I just noticed a FutureWarning where the promote option had been replaced by promote_options in pyarrow=14.

The overall issue was that the index was dropped on write completely.

Contributor

kukushking Feb 16, 2024

Ok understood, thanks.


          Merge branch 'main' into bugfix/index-cols

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          Merge branch 'main' into bugfix/index-cols

08f8c53

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Contributor Author

robert-schmidtke commented Feb 15, 2024

Hey all, thanks for keeping this PR up to date. If there's anything on my end that I can do to help make the build pass -- do let me know!

Contributor

malachi-constant commented Feb 15, 2024

AWS CodeBuild CI Report

CodeBuild project: GitHubCodeBuild8756EF16-4rfo0GHQ0u9a
Commit ID: 08f8c53
Result: SUCCEEDED
Build Logs (available for 30 days)

Powered by github-codebuild-logs, available on the AWS Serverless Application Repository

Contributor

malachi-constant commented Feb 15, 2024

AWS CodeBuild CI Report

CodeBuild project: GitHubDistributedCodeBuild6-jWcl5DLmvupS
Commit ID: 08f8c53
Result: SUCCEEDED
Build Logs (available for 30 days)

Powered by github-codebuild-logs, available on the AWS Serverless Application Repository

kukushking approved these changes

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kukushking left a comment

Thank you!

kukushking requested a review from jaidisido

February 16, 2024 11:48

jaidisido approved these changes

View reviewed changes

jaidisido merged commit 95e37bf into aws:main

17 checks passed

sawyerh referenced this pull request in sawyerh/highlights


          Update Serverless (Python) (#120)

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This PR contains the following updates:

| Package | Change | Age | Adoption | Passing | Confidence |
|---|---|---|---|---|---|
|
[aws-lambda-powertools](https://github.com/aws-powertools/powertools-lambda-python)
([changelog](https://github.com/aws-powertools/powertools-lambda-python/releases))
| `2.34.2` -> `2.38.1` |
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---

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<summary>pytest-dev/pytest-mock (pytest-mock)</summary>

###
[`v3.14.0`](https://github.com/pytest-dev/pytest-mock/blob/HEAD/CHANGELOG.rst#3140-2024-03-21)

[Compare
Source](https://github.com/pytest-dev/pytest-mock/compare/v3.13.0...v3.14.0)

- `#&#8203;415 <https://github.com/pytest-dev/pytest-mock/pull/415>`\_:
`MockType` and `AsyncMockType` can be imported from `pytest_mock` for
type annotation purposes.

- `#&#8203;420
<https://github.com/pytest-dev/pytest-mock/issues/420>`\_: Fixed a
regression which would cause `mocker.patch.object` to not being properly
cleared between tests.

###
[`v3.13.0`](https://github.com/pytest-dev/pytest-mock/blob/HEAD/CHANGELOG.rst#3130-2024-03-21)

[Compare
Source](https://github.com/pytest-dev/pytest-mock/compare/v3.12.0...v3.13.0)

- `#&#8203;417 <https://github.com/pytest-dev/pytest-mock/pull/417>`\_:
`spy` now has `spy_return_list`, which is a list containing all the
values returned by the spied function.
-   `pytest-mock` now requires `pytest>=6.2.5`.
- `#&#8203;410 <https://github.com/pytest-dev/pytest-mock/pull/410>`*:
pytest-mock's `setup.py` file is removed.
If you relied on this file, e.g. to install pytest using `setup.py
install`,
please see `Why you shouldn't invoke setup.py directly
<https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html#summary>`*
for alternatives.

</details>

<details>
<summary>jd/tenacity (tenacity)</summary>

### [`v8.3.0`](https://github.com/jd/tenacity/releases/tag/8.3.0)

[Compare Source](https://github.com/jd/tenacity/compare/8.2.3...8.3.0)

### New Features

- Added a new stop function: `stop_before_delay`, which will stop
execution if the next sleep time would cause overall delay to exceed the
specified delay. Useful for use cases where you have some upper bound on
retry times that you must not exceed, so returning before that timeout
is preferable than returning after that timeout.

### Bug Fixes

-   Preserve **defaults** and **kwdefaults** through retry decorator

### Other Notes

-   Add a "test" extra

</details>

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