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bakirillov/README.md

Hi there, I'm Bogdan A. Kirillov 👋

PhD in Life Sciences, Machine Learning Developer.

  • 🔭 I’m currently working on several Computational Biology projects
  • 🌱 I’m currently learning how to model a living system with PDEs
  • 💬 Ask me about how to build a Machine Learning-powered MVP for your startup
  • ⚡ Fun fact: cat gifs are the ultimate drug

Contacts and links:

bakirillov | Telegram bakirillov | Scholar



PhD thesis:

Uncertainty quantification and neural network interpretation for studying CRISPR mechanics: 10.13140/RG.2.2.15498.85448

Latest papers:

Measuring internal inequality in capsule networks for supervised anomaly detection: https://doi.org/10.1038/s41598-022-17734-7

Uncertainty-aware and interpretable evaluation of Cas9–gRNA and Cas12a–gRNA specificity for fully matched and partially mismatched targets with Deep Kernel Learning: https://academic.oup.com/nar/article/50/2/e11/6430490

Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235179 (preprint: https://www.biorxiv.org/content/10.1101/2020.06.11.145805v1)



bakirillov's Github Stats

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  1. awesome-underinvestigated-biology awesome-underinvestigated-biology Public

    Topics in biology that are not researched as much as they should be

    15 2

  2. capsule_ad capsule_ad Public

    Code for the reproduction of "Measuring Internal Inequality in Capsule Networks for Supervised Anomaly Detection"

    Jupyter Notebook

  3. uace uace Public

    Source code for https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab1065/6430490

    Jupyter Notebook 3 1

  4. episodic-memory-ml episodic-memory-ml Public

    Sources for "Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning"

    Jupyter Notebook 1

  5. neurovalidation neurovalidation Public

    Code for NN-based construct validity evaluation paper in DTGS'18

    Jupyter Notebook 1

  6. capsules capsules Public

    My implementation of capsule network with dynamic routing

    Jupyter Notebook 5 3