Merge pull request #60 from bamler-lab/dependabot/pip/cryptography-43… #399
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| env: | |
| CARGO_TERM_COLOR: always | |
| jobs: | |
| rust-test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Install latest stable Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| id: install-rust | |
| with: | |
| components: rustfmt, clippy | |
| - name: Cache Rust dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| target | |
| .cargo_home | |
| .cargo | |
| key: ${{ runner.os }}-no_pybindings-rust-${{ steps.install-rust.outputs.cachekey }}-${{ hashFiles('Cargo.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-no_pybindings-rust-${{ steps.install-rust.outputs.cachekey }}- | |
| - name: Check rust formatting | |
| run: cargo fmt -- --check | |
| - name: Lint with clippy | |
| env: | |
| RUSTFLAGS: "-D warnings" | |
| run: cargo clippy --all-targets --all-features | |
| # The environment variable `RUSTFLAGS` doesn't actually seem to have any effect on rustdoc, | |
| # but we set it here to the same value as in all other cargo runs as changing it would | |
| # cause unnecessary recompilation of some dependencies. | |
| - name: Check for broken doc links | |
| env: | |
| RUSTFLAGS: "-D warnings" | |
| run: cargo rustdoc -- -D rustdoc::broken-intra-doc-links | |
| - name: Test in development mode | |
| env: | |
| RUSTFLAGS: "-D warnings" | |
| run: cargo test | |
| - name: Test in release mode | |
| env: | |
| RUSTFLAGS: "-D warnings" | |
| run: cargo test --release | |
| miri-test: | |
| name: no_std and miri | |
| runs-on: ${{ matrix.os }} | |
| needs: rust-test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Find out latest rust nightly version that has miri | |
| id: rust-version | |
| shell: bash | |
| run: | | |
| case ${{ matrix.os }} in | |
| ubuntu-latest) | |
| arch="x86_64-unknown-linux-gnu" | |
| ;; | |
| macos-latest) | |
| arch="x86_64-apple-darwin" | |
| ;; | |
| windows-latest) | |
| arch="x86_64-pc-windows-msvc" | |
| ;; | |
| esac | |
| version="nightly-$(curl -s https://rust-lang.github.io/rustup-components-history/$arch/miri)" | |
| echo "Found version: $version" | |
| echo "rustc=$version" >> $GITHUB_OUTPUT | |
| - name: Cache Rust dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| target | |
| .cargo_home | |
| .cargo | |
| key: ${{ runner.os }}-no_pybindings-miri-${{ steps.install-rust.outputs.cachekey }}-${{ hashFiles('Cargo.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-no_pybindings-miri-${{ steps.install-rust.outputs.cachekey }}- | |
| - name: Install rust ${{ steps.rust-version.outputs.rustc }} | |
| uses: dtolnay/rust-toolchain@master | |
| id: install-rust | |
| with: | |
| toolchain: ${{ steps.rust-version.outputs.rustc }} | |
| components: miri, rust-src | |
| - name: Test `no_std` compatibility | |
| shell: bash | |
| working-directory: ensure_no_std | |
| run: cargo +${{ steps.rust-version.outputs.rustc }} build | |
| - name: Run tests in miri | |
| env: | |
| RUSTFLAGS: "-Zrandomize-layout" | |
| MIRIFLAGS: "-Zmiri-symbolic-alignment-check -Zmiri-disable-isolation" | |
| run: cargo +${{ steps.rust-version.outputs.rustc }} miri test --no-fail-fast | |
| python-test: | |
| runs-on: ${{ matrix.os }} | |
| needs: rust-test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry | |
| poetry install --no-root | |
| - name: Install latest stable Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| id: install-rust | |
| - name: Cache Rust dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| target | |
| .cargo_home | |
| .cargo | |
| key: ${{ runner.os }}-pybindings-rust-${{ steps.install-rust.outputs.cachekey }}-${{ hashFiles('Cargo.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pybindings-rust-${{ steps.install-rust.outputs.cachekey }}- | |
| - name: Build Python package | |
| run: poetry run maturin develop --release --features pybindings | |
| - name: pytest with numpy version 1.x | |
| shell: bash | |
| run: | | |
| poetry run python -m pip install numpy~=1.16 | |
| INSTALLED_NUMPY_VERSION=$(poetry run python -c 'import numpy; print(numpy.__version__)') | |
| echo "Installed numpy version: $INSTALLED_NUMPY_VERSION" | |
| if [ "x${INSTALLED_NUMPY_VERSION:0:2}y" == "x1.y" ]; then | |
| echo "Numpy version matches expectation." | |
| else | |
| echo "ERROR: wrong numpy version." | |
| exit 1 | |
| fi | |
| poetry run pytest tests/python | tee pytest-numpy1.out | |
| exit ${PIPESTATUS[0]} | |
| - name: Verify that pytest used correct python version | |
| shell: bash | |
| run: | | |
| USED_PYTHON_VERSION=$(grep -A1 -iE '^=+ test session starts =+$' pytest-numpy1.out | perl -ne 'if ($_ =~ / -- Python (\d+\.\d+)\.\d+/i) { print "$1"; }') | |
| echo "Expected python version: ${{ matrix.python-version }}" | |
| echo "Found python version: $USED_PYTHON_VERSION" | |
| if [ "x${{ matrix.python-version }}y" == "x${USED_PYTHON_VERSION}y" ]; then | |
| echo "Versions match." | |
| else | |
| echo "ERROR: versions don't match." | |
| exit 1 | |
| fi | |
| - name: pytest with numpy version 2.x | |
| if: matrix.python-version != '3.8' && matrix.python-version != '3.9' | |
| shell: bash | |
| run: | | |
| poetry run python -m pip install numpy~=2.1 | |
| INSTALLED_NUMPY_VERSION=$(poetry run python -c 'import numpy; print(numpy.__version__)') | |
| echo "Installed numpy version: $INSTALLED_NUMPY_VERSION" | |
| if [ "x${INSTALLED_NUMPY_VERSION:0:2}y" == "x2.y" ]; then | |
| echo "Numpy version matches expectation." | |
| else | |
| echo "ERROR: wrong numpy version." | |
| exit 1 | |
| fi | |
| poetry run pytest tests/python | tee pytest-numpy2.out | |
| exit ${PIPESTATUS[0]} | |
| - name: Verify that pytest used correct python version | |
| if: matrix.python-version != '3.8' && matrix.python-version != '3.9' | |
| shell: bash | |
| run: | | |
| USED_PYTHON_VERSION=$(grep -A1 -iE '^=+ test session starts =+$' pytest-numpy2.out | perl -ne 'if ($_ =~ / -- Python (\d+\.\d+)\.\d+/i) { print "$1"; }') | |
| echo "Expected python version: ${{ matrix.python-version }}" | |
| echo "Found python version: $USED_PYTHON_VERSION" | |
| if [ "x${{ matrix.python-version }}y" == "x${USED_PYTHON_VERSION}y" ]; then | |
| echo "Versions match." | |
| else | |
| echo "ERROR: versions don't match." | |
| exit 1 | |
| fi | |
| testall: | |
| runs-on: ubuntu-latest | |
| name: Meta job for all tests | |
| needs: [rust-test, miri-test, python-test] | |
| steps: | |
| - name: Done | |
| run: echo "All tests successful." |