Update scipy from 1.3.1 to 1.14.1 #1206
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test readtagger | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| task: ['py37-lint', 'planemo'] | |
| steps: | |
| - run: sudo apt-get install libcurl4-nss-dev | |
| - uses: actions/checkout@v2 | |
| - run: git fetch --prune --unshallow | |
| - uses: goanpeca/setup-miniconda@master | |
| with: | |
| channels: conda-forge,bioconda | |
| - name: Install conda-build | |
| run: conda install conda-build=3.18.12 | |
| - name: Build and install readtagger | |
| shell: bash -l {0} | |
| run: | | |
| conda build conda/multiprocessing-logging | |
| conda build conda/readtagger | |
| conda install --use-local readtagger | |
| - name: Install test dependencies | |
| shell: bash -l {0} | |
| run: conda install tox virtualenv | |
| - name: Cache test data | |
| run: curl -L https://github.com/bardin-lab/dmel-transposon-reference-data/raw/master/fasta_sequences/dm6_TE_annotations_sequences.fasta -o ~/ref.fa | |
| - name: Test with tox | |
| shell: bash -l {0} | |
| run: | | |
| tox -e '${{ matrix.task }}' |