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@bartongroup

Geoff Barton's Computational Biology Group

Popular repositories

  1. Proteus Proteus Public

    R package for analysing proteomics data

    R 46 3

  2. RATS RATS Public

    Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

    R 32 1

  3. 2passtools 2passtools Public

    Two pass alignment for long reads

    Python 20 1

  4. AlmostSignificant AlmostSignificant Public

    A server for maintaining high-throughput sequencing QC data

    Python 13

  5. yanocomp yanocomp Public

    Yet another nanopore modification comparison tool

    Python 11 1

  6. profDGE48 profDGE48 Public

    Code base for profiling highly replicated differential gene expression RNA-seq.

    Perl 10 5

Repositories

Showing 10 of 69 repositories
  • dexdash Public

    Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

    bartongroup/dexdash’s past year of commit activity
    R 2 0 0 0 Updated Aug 22, 2024
  • slivka-bio Public

    Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalview

    bartongroup/slivka-bio’s past year of commit activity
    Python 2 Apache-2.0 1 4 0 Updated Aug 19, 2024
  • dexdata Public

    Example data for dexdash package

    bartongroup/dexdata’s past year of commit activity
    R 0 0 0 0 Updated Aug 16, 2024
  • PT_Arabidopsis_names_to_annot Public

    annotates At names.

    bartongroup/PT_Arabidopsis_names_to_annot’s past year of commit activity
    0 0 0 0 Updated Aug 15, 2024
  • FRAGSYS Public
    bartongroup/FRAGSYS’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 12, 2024
  • slivka Public
    bartongroup/slivka’s past year of commit activity
    Python 7 Apache-2.0 3 26 (1 issue needs help) 1 Updated Aug 8, 2024
  • LBS-comparison Public

    This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools

    bartongroup/LBS-comparison’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Aug 8, 2024
  • MG_T6SS_tn-seq Public

    Analysis of Ssp4 and Ssp6 effects on Pseudomonas fluorescens using Tn-seq (Coulthurst)

    bartongroup/MG_T6SS_tn-seq’s past year of commit activity
    R 0 0 0 0 Updated Aug 7, 2024
  • PT_interogate_m6anet_results Public

    Determine exon location of predicted m6a methylation sites

    bartongroup/PT_interogate_m6anet_results’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 2, 2024
  • PT_identify_polyA_sites Public

    script to identify polyA start sites in nanopore direct RNAseq data mapped to a genome

    bartongroup/PT_identify_polyA_sites’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 1, 2024
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