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CHANGELOG.md

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Changelog:

[0.8.5] - (upcoming)

  • Added: support for Python 3.11, 3.12 and 3.13
  • Fixed: logging configuration crashing on Python 3.12.
  • Fixed: invalid file path resolution when the path contained symlinks and the SLIVKA_HOME was provided explicitly.
  • Updated: transition from using distutils to packaging for package version information.
  • Added: database documents tests
  • Fixed: missing status entries in job status cache for up to 5 seconds after new jobs are submitted. Now, every time a new job is submitted, the cache is invalidated.
  • Fixed: API responses involving result file return actual location of the resource instead of the path inferred form the job id
  • Changed: the flat structire of job directories is changed into a tree with the first two levels consisting of the counter part of the object id and the last level of the remaining part.
  • Changed: bumped the version of werkzeug library used
  • Fixed: explicitly defined pytest.marks used in tests internally
  • Added: migration tool converting old project structure to the new one

[0.8.4] - 2024-02-05

  • Changed: prefix middleware no longer squashes repeating slashes.
  • Changed: prefix middleware removes single trailing slash in prefix.
  • Fixed: tests of prefix middleware.
  • Changed: the choice field only allows the keys of the choices mapping as valid input values.
  • Changed: the JSON response for job resource contains the choice keys instead of values for choice inputs.
  • Changed: name of the settings file changed to settings.yaml from config.yaml in the documentation.
  • Added: Ability to run jobs with LSF workload manager.
  • Added: Interval parameter for service tests that controls the frequency with which the tests are run.

[0.8.3b3] - 2024-08-08

  • Added: argument constants can be specified in the runner definition and applied conditionally to the command line when that runner is selected.
  • Added: additional environment variables can be specified in the runner definition and applied conditionally when that runner is selected.
  • Added: selectors can be additionally parametrized from the runner config. Selector functions can take an extra context argument where there are given the service name, list of runner names and additional values associated with each runner. It allows writing reusable selectors and moves constraints from code to config file.

[0.8.3b2] - 2024-06-25

  • Added: filtering options to the usage statistics repository. Entries can be filtered by service name, date ranges and completion status.
  • Added: tests of the filtering option.
  • Added: python-dateutil dependency which provides rich datetime manipulation functions.
  • Added: OpenAPI documentation of the /stats endpoint

[0.8.3b1] - 2024-06-18

  • Added: service usage statistics repository which reads the number of jobs run each month
  • Added: service usage view API endpoint
  • Added: tests of the usage statistics repository

[0.8.3b0] - 2023-12-13

  • Added: periodic service health checks
    • added "tests" section to service configuration
    • tests are run every hour (not currently configurable) and the reports are stored in the database
    • service status is no longer determined from user jobs
  • Deprecated: slivka.db.documents.ServiceState class. Usages should be replaced by slivka.db.repositories.ServiceStatusRepository
  • Changed: main configuration and service files version changed to 0.8.3. Versions 0.3 for configuration and 0.8 for services are still supported.
  • Added: new documentation entries describing automated tests feature.

[0.8.2b0] - 2023-11-21

  • Changed: migrated all tests from a deprecated nose framework to pytest
  • Removed: nose removed from project dependencies.
  • Fixed: fixed failures caused by the resource loader being inconsistent across different python versions.
  • Changed: server returns 1970-01-01T01:00:00 (unix timestamp 0) as the service status timestamp when the status is undefined instead of returning the current time.
  • Changed: switched to python-daemon library for managing daemons and pid files.
  • Fixed: automatically resolve pid file path to the absolute path. Fixes permission errors when relative path was combined with a --daemon flag.

[0.8.1b1] - 2023-07-11

  • Changed: dependency updates
    • setuptools dependency changed to >=65.5.1
    • removed upper version limit from all dependencies
  • Removed: requirements.txt file no longer present in the repository. Install with editable mode during development.
  • Fixed: api blueprint name clash
  • Fixed: replaced usages of deprecated pkg_resources with a newer importlib.resources module

[0.8.1b0] - 2022-12-14

  • Added: new SlurmRunner which executes jobs using Slurm workload manager.
  • Added: custom parameters can be specified for the sbatch in the configuration using sbatchargs option
  • Changed: SlurmRunner uses C-ansi escaping for control characters present in the command
  • Fixed: use sources from the current commit for building conda package
  • Fixed: include runner.bash.tpl in the manifest file
  • Fix: include media type name in a warning message issued when the media type validator is not defined

[0.8.0b20] - 2022-11-11

  • Changed: use Redoc as a default openapi documentation generator.
  • Changed: serve redoc-index.html and openapi.yaml from project static directory allowing per-instance customisation.
  • Fixed: reset mock database state before every scheduler test fixing job requests from previous tests from leaking to later tests.
  • Fixed: integer and decimal fields no longer match boolean values and integer fields no longer match floats which are not integers
  • Added: unit tests for REST API endpoints
  • Fixed: MongoDocument returns None instead of raising an exception when searching documents using improperly formatted document id
  • Changed: hide min or max exclusive constraints if corresponding min or max constraint is not set

[0.8.0b19] - 2021-10-26

  • Changed: indicate request execution failure with exceptions instead of status tuples.
  • Fixed: use full list of environment variables (user + system) when interpolating variables specified inside the command line
  • Fixed: starting slivka as a daemon no longer crashes when launched without explicit --home parameter. SLIVKA_HOME variable is always configured before the process is forked.

[0.8.0b18] - 2021-10-25

  • Changed: merged JobMetadata object into JobRequest object. It improves code clarity and avoids fake relations between database documents.

[0.8.0b17] - 2021-10-22

  • Fixed: set database server selection timeout to 2ms making connection issues throw quickly instead of blocking for a minute.
  • Fixed: all calls to the database are executed within a retry_call preventing entire application crash in case of the database connection failure.

[0.8.0b16] - 2021-08-10

  • Removed python client documentation from slivka framework documentation.
  • Updated framework documentation.
  • Fixed: update completion time property of job objects when job completes.
  • Changed: use b64-encoded database id to identify jobs instead of randomly generated uuid. it makes ids shorter and utilized database indexing.

[0.8.0b15] - 2021-07-28

  • Changed: file id is now used as an output file label if the name is not specified explicitly. no more null labels.