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Attempting to install hg38 throws this error (here reproduced manually):
$ wget --random-wait --retry-connrefused -c -O hsa.gff3 https://www.mirbase.org/ftp/21/genomes/hsa.gff3 --2023-11-01 07:19:53-- https://www.mirbase.org/ftp/21/genomes/hsa.gff3 Resolving www.mirbase.org (www.mirbase.org)... 130.88.97.249 Connecting to www.mirbase.org (www.mirbase.org)|130.88.97.249|:443... connected. ERROR: no certificate subject alternative name matches requested host name ‘www.mirbase.org’. To connect to www.mirbase.org insecurely, use `--no-check-certificate'. $ echo $? 5
Reviewing the certificate shows this (edited for clarity):
$ host=www.mirbase.org $ echo "QUIT" | openssl s_client -connect $host:443 -showcerts 2>&1 | sed -n "/BEGIN CERTIFICATE/,/END CERTIFICATE/p" > /tmp/$host.pem $ openssl x509 -in /tmp/$host.pem -noout -text ... Issuer: C = US, O = Let's Encrypt, CN = R3 Validity Not Before: Oct 10 18:39:26 2023 GMT Not After : Jan 8 18:39:25 2024 GMT Subject: CN = mirbase.org ... X509v3 Subject Alternative Name: DNS:mirbase.org
Which indicates that URLs must now use mirbase.org not www.mirbase.org.
The text was updated successfully, but these errors were encountered:
Update mirbase.org URLs fixes bcbio/bcbio-nextgen#3721 fixes bcbio/bc…
f9c1cc7
…bio-nextgen#3722
Update miRBase download URLs (#413)
cd1b727
* Update mirbase.org URLs fixes bcbio/bcbio-nextgen#3721 fixes bcbio/bcbio-nextgen#3722 * Some miRBase downloads no longer require uncompressing. Fixes bcbio/bcbio-nextgen#3723 --------- Co-authored-by: Rob Chekaluk <rchekaluk@ppolitics.org>
Successfully merging a pull request may close this issue.
Attempting to install hg38 throws this error (here reproduced manually):
Reviewing the certificate shows this (edited for clarity):
Which indicates that URLs must now use mirbase.org not www.mirbase.org.
The text was updated successfully, but these errors were encountered: