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@naumenko-sa naumenko-sa released this 15 Dec 03:37
· 65 commits to master since this release
a2cbdd1
  • Fix vcf header bug: T/N SAMPLE lines are back - needed for import to SolveBio
  • add strandedness: auto for -l A option in salmon
  • report 10x more peaks in CHIP/ATAC-seq - use 0.05 qvalue
  • fix misleading RNA-seq duplicated reads statistics: thanks @sib-bcf
  • reorganize conda environments
  • snpEff 5.0
  • strandedness: auto
  • document WGBS pipeline steps
  • make --local an option, not default in bismark alignment - too slow
  • bcbioRNASeq update to 0.3.44
  • pureCN update to 2.0.1
  • octopus update to 0.7.4