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@roryk roryk released this 05 Apr 22:53
· 570 commits to master since this release
v1.2.2
4b88065
  • Fix for not properly looking up R environment variables in the base environment.
  • Remove --use-new-qual-calculator which was eliminated in GATK 4.1.5.0.
  • Ensure header is not written for a Series. In pandas 0.24.0 the default for header was changed from
    False to True so we have to set it explictly now.
  • Remove unused Dockerfile. Thanks to @matthdsm.
  • ATAC-seq: Skip peak-calling on fractions with < 1000 reads.
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