remove intermediate print

bcgsc · Jan 17, 2019 · 77a4393 · 77a4393
1 parent f5b2de1
commit 77a4393
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Showing 2 changed files with 20 additions and 27 deletions.
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
diff --git a/src/head_align_tail_dist.py b/src/head_align_tail_dist.py
@@ -83,13 +83,15 @@ def get_head_tail(cigar_string):
 
 
 def head_align_tail(prefix, alnm_ftype):
+    '''
     out1 = open(prefix + "_total.txt", 'w')
     out2 = open(prefix + "_middle.txt", 'w')
     out3 = open(prefix + "_head.txt", 'w')
     out4 = open(prefix + "_middle_ref.txt", 'w')
     out5 = open(prefix + "_ht.txt", 'w')
     out6 = open(prefix + "_ratio.txt", 'w')
     out7 = open(prefix + "_tail.txt", 'w')
+    '''
 
     aligned_length = []
     total_length = []
@@ -115,13 +117,15 @@ def head_align_tail(prefix, alnm_ftype):
                 if ht != 0:
                     r = float(head) / ht
                     head_vs_ht_ratio.append(r)
+                '''
                 out1.write(query[5] + '\n')
                 out2.write(query[3] + '\n')
                 out3.write(query[2] + '\n')
                 out4.write(str(aligned_ref) + '\n')
                 out5.write(str(ht) + '\n')
                 out6.write(str(ratio) + '\n')
                 out7.write(str(tail) + '\n')
+                '''
     else:
         sam_reader = HTSeq.SAM_Reader
         alnm_file_sam = prefix + "_primary.sam"
@@ -143,6 +147,7 @@ def head_align_tail(prefix, alnm_ftype):
             if head != 0:
                 r = float(head) / ht
                 head_vs_ht_ratio.append(r)
+            '''
             out1.write(str(read_len_total) + '\n')
             out2.write(str(middle) + '\n')
             out3.write(str(alnm.read.name) + '\t' + str(head) + '\n')
@@ -158,6 +163,7 @@ def head_align_tail(prefix, alnm_ftype):
     out5.close()
     out6.close()
     out7.close()
+    '''
 
     aligned_length = numpy.array(aligned_length)
     total_length = numpy.array(total_length)