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Fix infinite loop for very short references #199

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merged 2 commits into from
Dec 5, 2023
Merged

Fix infinite loop for very short references #199

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d93e8c1
Update simulator.py
kmnip Nov 24, 2023
c34e638
Update simulator.py
kmnip Nov 25, 2023
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2 changes: 1 addition & 1 deletion src/simulator.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1321,7 +1321,7 @@ def simulation_aligned_genome(dna_type, min_l, max_l, median_l, sd_l, out_reads,
seg_error_dict_list.append(error_dict)
seg_error_count_list.append(error_count)

if total < min_l or total > max_l or max(seg_length_list) > max_chrom:
if total < min_l or total > max_l:
continue

seg_pointer += segments
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