#42 updated help message

bcgsc · Feb 2, 2018 · fefb471 · fefb471
1 parent f4c9a7a
commit fefb471
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/mavis/config.py b/mavis/config.py
@@ -541,7 +541,7 @@ def generate_config(parser, required, optional, log=devnull):
         '--external_conversion', metavar=('<alias>', '<"command">'), nargs=2, default=[],
         help='alias for use in inputs and full command (quoted)', action='append')
     optional.add_argument(
-        '--add_defaults', default=False, action='store_true', help='do not write current defaults to the config output')
+        '--add_defaults', default=False, action='store_true', help='write current defaults for all non-specified options to the config output')
     augment_parser(['annotations'], optional, optional)
     # add the optional annotations file (only need this is auto generating bam stats for the transcriptome)
     augment_parser(['skip_stage'], optional)