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#325 Adding arriba support #326

Merged
merged 5 commits into from
May 16, 2022
Merged

#325 Adding arriba support #326

merged 5 commits into from
May 16, 2022

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calchoo
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@calchoo calchoo commented Apr 20, 2022

Adding support for arriba output file

@calchoo calchoo self-assigned this Apr 21, 2022
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codecov bot commented Apr 21, 2022

Codecov Report

Merging #326 (dc67258) into develop_v2 (6689de6) will increase coverage by 9.54%.
The diff coverage is 96.15%.

@@              Coverage Diff               @@
##           develop_v2     #326      +/-   ##
==============================================
+ Coverage       81.48%   91.03%   +9.54%     
==============================================
  Files              57       58       +1     
  Lines           10322    10348      +26     
==============================================
+ Hits             8411     9420    +1009     
+ Misses           1911      928     -983     
Flag Coverage Δ
unittests 91.03% <96.15%> (+9.54%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
mavis/tools/constants.py 100.00% <ø> (ø)
mavis/tools/arriba.py 95.65% <95.65%> (ø)
mavis/tools/__init__.py 90.90% <100.00%> (+0.21%) ⬆️
mavis/annotate/fusion.py 96.02% <0.00%> (+0.33%) ⬆️
mavis/util.py 88.25% <0.00%> (+0.33%) ⬆️
mavis/constants.py 94.04% <0.00%> (+0.42%) ⬆️
mavis/config.py 88.69% <0.00%> (+0.50%) ⬆️
mavis/bam/cigar.py 98.14% <0.00%> (+0.61%) ⬆️
mavis/schedule/job.py 78.26% <0.00%> (+0.72%) ⬆️
mavis/cluster/main.py 90.24% <0.00%> (+0.81%) ⬆️
... and 22 more

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mattdoug604
mattdoug604 previously approved these changes Apr 25, 2022
@creisle
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creisle commented Apr 25, 2022

Would be good to add this to the list of supported tools in the documentation as well

@mattdoug604 mattdoug604 self-requested a review May 16, 2022 17:04
@calchoo calchoo merged commit cfc68d4 into develop_v2 May 16, 2022
@calchoo calchoo mentioned this pull request Jun 14, 2023
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3 participants